Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00514 ATGCTATCATCGCTTTTCAAACCGTGTTTCTCTCTTCAGTTATCTACCCGCATTTCCGTTAACTCCTCTTCCGTAATCCCTTTCAATTTCTCATTCCCTCTCTCTTCAACCCCTCGCCGTGCAATGTCAAAACCTCGCCCCTCCGCCTTCGACGCCCTCATGTCCGGCGCACGCGCCGCCGCCGCCAAGAAGAAACCCCCTCCGCCTACCTCATCCTCATCTCCCAAGAAAAGAAAATCTCCTCCGCCTTCGCCTTTGCCTAAACCTCCTCAATCCACACTCTCCGCTCAAAACCCTAACACCAACCTCAAAACCCTAGAAACAGTTGAATCAGTTCAACAACCCCATGAAACTGTCCAGGAAGAACCTCCGAGCAAGATCCGTAACACTTTACCTTCTCCTAAGGACGTAGTCGCCGAATTGAAGGAACGAGTTCCGCAGCTGAAGAAGAAACCGTCGAGTTTTGACCCGAGTGAGGTTGCTTGCTGGGAGAAAGACAAGCCTGTGCCGTTTTTGTTACTCTGTTTGGCGTTTGACATGATTGCAGCCGAGAGTGGGAGGATTGTGATGACTGACATTGTGTGCAATCTGTTGAGGACTGTTATACACGCTGCGCCGGATGATCTTGTTTCGGTTGTTTATTTATCTGCGAACAGAATTGCTCCGGCTCATGTAGGGTTAGAATTGGGGATTGGTGATGCTTCTATTATTAAGGCGCTTGCGGAGGCGTATGGAAGGACCGAGAAGCAGATTAAGAATCAGTACAAGGAAAAAGGTGACTTGGGCTTAGTTGCGAAAGCTAGCCGATCATCGCAGTCTATGATGCGGAAGCCTGAACCTTTGACTATTACAAAGGTGTTCAACATATTTCATCTTATTGCAAAGGAATCTGGAAAAGACAGTCAAGAGAAGAAAAAGAATCACATAAAGTCACTTCTTGTTGCTGCAATTGACTGTGAACCTCTATACATAATCCGTTTGCTACAGTCAAAATTGCGAATTGGATATGCCGAGCAAACTCTCTTAGCTGCATTAGGTCATGCTGCAGTGTATTCTGAAGAACATTCTAAACCGCCTCATGAAATTCAGTCTCCTTTTGAAGAGGCTGCTAAAATTGTTAAAAAAGTCTATTCTGTTCTTCCCGACTATGACAAAATTGTGTCTGCACTTCTTTCACATGGTGTATGGGAACTTCCAAAGAAATGTGATTTCACTCCCGGTGTTCCTGTTGGGCCTATGCTGTCAAAAGCAACCAAAGGTGTAGCTGAAATTCTAAATAAGTTTCAGGATGTAGAGTTTACATGTGAATACAAATATGATGGAGAGCGTGCTCAGATACATTACTTGGAGAATGGCTCAGTAGAGATTTACAGTAGAAATGCTGAACGGAACACTGGGAAGTTTCCTGATGTTGTTGCGGCAGTTTCAAGGTTAAAGAAAACAACAGTATCATCCTTTATTCTTGATTGTGAACTTGTTGCATATGATCGTGCAAAACAGAGAATCCTTCCTTTCCAGGTGCTTAGTACTCGGGCCCGCAAAAATGTCAGCGTGAGTGACATAAAGGTTGAAGTTTGCATATTTGCTTTTGATTTGTTGTACCTCAATGGCCAAGCACTTCTTCAAGAAAACCTGAAAATCCGTAGAGAGCATCTGTACGGCTCTTTTGAGGAAGAGACTGGATTCTTTCAGTTTGCAACATCAACTACATCAAATGATGTTGAGGAGATACAAAAATTTCTTGACGAAGCTATTGATGCAAGTTGTGAGGGATTAATTATTAAAACATTGCATGAAGACGCCACATATGAGCCCTCCAAGCGGTCACTCAACTGGCTGAAACTGAAGAAAGATTATATGGATAATATTGGGGACTCGCTAGATTTGGTACCTATTGGTGCTTTTGCTGGTCGAGGGAAGCGCACAGGAGTGTATGGTGCTTTTCTCCTTGCTTGCTATGACACTGATAGGGAAGAATTTCAAGGTCTTTGTAAGATAGGAACTGGATTCACAGAAAACGTGCTTGAAGAACGTTCTACTAGCCTTCGCACTAAAGTGATTCCCAAACCAAAGGCATATTATCAATATGGAGAATCAGTCAAACCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTAAAAGCCGCAGATCTGACCATTAGCCCTGTTTACCGAGCTGCAGTGGGAACAGTAGATCCCAATAAGGGAATATCTCTGCGATTTCCGCGTCTACTTCGAGTTCGGCCAGACAAAGCTCCTGAACAGGCCACCTCTTCAGAGCAGATTGCTGAAATGTATAAAGCTCAGAAGCACAATCACAACGACATTCAGGATGCCAGACAGAATGATGATGAAGATGTTTAA 2367 0.4411 MLSSLFKPCFSLQLSTRISVNSSSVIPFNFSFPLSSTPRRAMSKPRPSAFDALMSGARAAAAKKKPPPPTSSSSPKKRKSPPPSPLPKPPQSTLSAQNPNTNLKTLETVESVQQPHETVQEEPPSKIRNTLPSPKDVVAELKERVPQLKKKPSSFDPSEVACWEKDKPVPFLLLCLAFDMIAAESGRIVMTDIVCNLLRTVIHAAPDDLVSVVYLSANRIAPAHVGLELGIGDASIIKALAEAYGRTEKQIKNQYKEKGDLGLVAKASRSSQSMMRKPEPLTITKVFNIFHLIAKESGKDSQEKKKNHIKSLLVAAIDCEPLYIIRLLQSKLRIGYAEQTLLAALGHAAVYSEEHSKPPHEIQSPFEEAAKIVKKVYSVLPDYDKIVSALLSHGVWELPKKCDFTPGVPVGPMLSKATKGVAEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSRLKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVSVSDIKVEVCIFAFDLLYLNGQALLQENLKIRREHLYGSFEEETGFFQFATSTTSNDVEEIQKFLDEAIDASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMDNIGDSLDLVPIGAFAGRGKRTGVYGAFLLACYDTDREEFQGLCKIGTGFTENVLEERSTSLRTKVIPKPKAYYQYGESVKPDVWFEASEVWEVKAADLTISPVYRAAVGTVDPNKGISLRFPRLLRVRPDKAPEQATSSEQIAEMYKAQKHNHNDIQDARQNDDEDV 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00514 788 Gene3D - 621 783 IPR012340 -
Vifa6g00514 788 Pfam DNA ligase N terminus 170 345 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa6g00514 788 CDD Adenylation_DNA_ligase_I_Euk 401 619 - -
Vifa6g00514 788 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 436 444 IPR016059 GO:0003909
Vifa6g00514 788 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 68 784 - -
Vifa6g00514 788 Gene3D - 422 620 - -
Vifa6g00514 788 NCBIfam ATP-dependent DNA ligase 228 768 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vifa6g00514 788 FunFam DNA ligase 412 618 - -
Vifa6g00514 788 ProSitePatterns ATP-dependent DNA ligase signature 2. 590 616 IPR016059 GO:0003909
Vifa6g00514 788 MobiDBLite consensus disorder prediction 767 781 - -
Vifa6g00514 788 Gene3D DNA ligase/mRNA capping enzyme 441 566 - -
Vifa6g00514 788 MobiDBLite consensus disorder prediction 52 133 - -
Vifa6g00514 788 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 152 402 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa6g00514 788 MobiDBLite consensus disorder prediction 93 127 - -
Vifa6g00514 788 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 404 622 - -
Vifa6g00514 788 SUPERFAMILY Nucleic acid-binding proteins 624 770 IPR012340 -
Vifa6g00514 788 Pfam ATP dependent DNA ligase domain 412 616 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vifa6g00514 788 MobiDBLite consensus disorder prediction 751 788 - -
Vifa6g00514 788 FunFam DNA ligase 621 780 - -
Vifa6g00514 788 Gene3D - 146 414 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa6g00514 788 ProSiteProfiles ATP-dependent DNA ligase family profile. 518 654 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vifa6g00514 788 CDD OBF_DNA_ligase_I 624 769 - -
Vifa6g00514 788 MobiDBLite consensus disorder prediction 68 92 - -
Vifa6g00514 788 Pfam ATP dependent DNA ligase C terminal region 641 752 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vifa6g00514 788 FunFam DNA ligase 147 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00514 Vifa-Chr6 197866081 197878092 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00514 3 774 Core DNA Replication Machinery Family AT1G08130 66.067 0.0 1044
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00514 K10747 - gmx:100783155 1135.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00514 6 197866081 197878092 Vifa6g00514 6 197866081 197878092 ECH