Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00510 ATGGATTTTTATCCAGAGACACTTGCTCACATTAACAATGACTTTGAGTTACACGATTTCATTGAAGATCCAAACTTTGATCAATTCATCAACTTGATTCGTGGGGAAGAAAATGAAGATACTACTATGTGTAACTTCAATTCTGACCTAATAATGAGTCAAAGCTTTGTTGATAACTCATTCATTTCATTTCCTACAAACTCATTTGATCACTCCAGTAATAATTTTGTCACCCCTTTTGATCCTACTTCTTCACTTGGCTCTTTATCTTGTTTTGATGGAGAAGCTAAGAGGGAAATAAGAGAAGTGAATGATAATGATAATGATAACGATAACGATAACGATAACGATAACGATAACGATAACGATGATGATGATAATTATTCTTCTCCAACACCAACTACAAGTGGTGATACTAAGCCAAGGTTGAAAACGGATAGGTCCAAGACTTTGGAATCTGAGAGGAGGAGGAGAGGTCGAATGAAGGATAAGCTCTACGCATTGCGATCTTTGGTTCCCAATATAACTAAGATGGATAAGGCTTCTATAATTGGAGATGCTGTTTCATATATGCAAGAACTTCAATCACAAGCCAAGAAGCTCAAGGCTGAGGTTGCTGGACTTGAAGCATCCTTAGCCGTATCCAAATCTCATCAAGGATCAATTGAAAACCACAAAAATATTCAATTCAATGATAACACTAGTTCAATATTCAAGAAAATTTTCCAGATGGATATGTTTCAAGTGGATGAAAGAGGGTTTTATGTTAAAATAATATGCAATAAAGGAGAAAGAGTGGCTGCTTCATTGTACAAATCAGTTGAATCTTTGAGAGATTTCAATGTTCAGAATTCAAATTTGGCCACAGTTTCTGACAATTTTCTACTTACATTTTCATTCAATGTGAAAAATTCAGAGCCAATAATTAACATGCCCAATTTAAAGCTATGGGTGATTGGAGCTTTTCTAAATCAAGGATTTGAATTCTTACCTTCTTTTTAA 1002 0.3463 MDFYPETLAHINNDFELHDFIEDPNFDQFINLIRGEENEDTTMCNFNSDLIMSQSFVDNSFISFPTNSFDHSSNNFVTPFDPTSSLGSLSCFDGEAKREIREVNDNDNDNDNDNDNDNDNDNDDDDNYSSPTPTTSGDTKPRLKTDRSKTLESERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYMQELQSQAKKLKAEVAGLEASLAVSKSHQGSIENHKNIQFNDNTSSIFKKIFQMDMFQVDERGFYVKIICNKGERVAASLYKSVESLRDFNVQNSNLATVSDNFLLTFSFNVKNSEPIINMPNLKLWVIGAFLNQGFEFLPSF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00510 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 218 IPR036638 GO:0046983
Vifa6g00510 333 MobiDBLite consensus disorder prediction 140 159 - -
Vifa6g00510 333 MobiDBLite consensus disorder prediction 101 159 - -
Vifa6g00510 333 MobiDBLite consensus disorder prediction 108 126 - -
Vifa6g00510 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Vifa6g00510 333 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 141 211 - -
Vifa6g00510 333 SMART finulus 151 200 IPR011598 GO:0046983
Vifa6g00510 333 Gene3D - 138 211 IPR036638 GO:0046983
Vifa6g00510 333 Coils Coil 191 211 - -
Vifa6g00510 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 319 - -
Vifa6g00510 333 Pfam Helix-loop-helix DNA-binding domain 150 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00510 Vifa-Chr6 196676686 196678160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00510 13 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 50.621 1.15e-91 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g00510 HLH 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00510 K26214 - gmx:100805451 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02426 1 389569233 389570490 Vifa6g00510 6 196676686 196678160 PCT