Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00505 ATGTCGAAAGCAGCACGTCTTCCCAATTACTCGGTAAATGATACTACATTCAAAGGGGCCTCCACTGAGACACTGAATTGGAATGAGAGTTTCTCAGTTTGTGATAATTGGACTGGTGTAACTTGCAATGAGGATAGGTCTAGAGTTATAGCGATTCGGTTACCCGGTGTTAGGTTTCATGGAAATATTCCACCTCATACTATTAGCAATCTTTCAGAGCTTCAGATTTTGAGTCTTAGATCCAATTTCATTACTGGGTTTTTTCCTTCTGATTTTTCTAATTTGAAAAATTTGTCCTTTCTTTATATGCAGTTTAACAATTTGTCTGGGTCTTTGCCTGATTTTTCAGCTTGGAAGAATCTTACTGTTGTTAATTTGTCTAGTAATAGGTTCAATGGGAGTATTCCTGTTTCGCTTTCGAATTTGACTCAGCTTTCGGGTTTGAACCTTGCGAGTAATGATCTTTCTGGTGATATTCCTGATCTGAATTTGTCGAGGTTGCAGACGCTGAATTTGTCTAACAATGATTTACATGGCACTGTGCCGAGCTCGTTAAGGAGGTTTCCTGATTCAGCGTTTGTTGGGAATAATGTAACTCTTGGAAATTATATTGTTGTTCCGCCCGTGCCTTCGCCGGTTTATGATGCGTCTTCGACCTCGGGGAAACGTGGGAGGCTAAGTGAAGCGGCGGTGCTTGGAATTGTTGTTGTTGGGAGTTTTCTTGGGCTTGTAGCTTTTGGTTTTTTGATGTTTGTGTGCTGTTGTGCTAGAAAAAAGGATGAAGATGATTTTGATGATGATGCATTTGTTGGAAAGTCGAATAAGGGAAAAATGTCTCTGGAGAAAGCAGTTTCAAGGAACATGGATGCTAATAATAAACTGACTTTCTTCGAGGGATGTAATTATGCGTTTGATTTAGAAGACTTGTTAAGAGCTTCCGCCGAGGTTCTAGGAAAGGGAACGTTTGGTACTGCTTACAAGGCGATTCTTGAGGATGCGACTGCGGTTGTTGTGAAGAGATTGAAGGAGGTAGCCTATGGAAAGAAGGATTTTGAGCAATACATGGAGATTGTTGGAAGTCTTAAACATGAGAATATGGTTGAGCTGAAAGCTTATTATTATTCAAAAGACGAGAAACTGATGGTATATGATTACTACAGTCAGGGGAGTGTTTCTTCTTTGTTGCATGGGAAAAGAGGAGAAGACAAGGTGCCTTTAGATTGGAATACTCGGTTGAGAATCGCTTTAGGTGCAGCAAGAGGCATTGCTCACATCCATGTTGAGAATAGCGGAAAAGTGGTACACGGAAACATCAAGTCTTCAAATATCTTTCTCAATACTAAGCAATACGGTTGTGTATCTGATCTTGGTCTGGCATCCATTTCAACCTCGCTCGCCCTACCCATCTCACGAGCAGCTGGTTACCGAGCACCAGAAGTTACAAACACTAGGAAAGCAGCACAACCTTCAGATGTTTACAACTTCGGCGTCGTGTTACTAGAGCTTCTAACCGGGAAATCACCTATCCACACAGCTGGTGGTGATGAGTTTGGGCACTTGGTGAGATGGGTTCATTCGGTTGTGCGAGAGGAGTGGACGACTGAAGTATTTGACTTAGAGTTGATGAGATATCCAAATATAGAAGAAGAGATGGTTGAGATGTTGCAGATAGCCATGTCTTGTGTGGTAAGAATGCCGGATCAGAGACCTAAGATGTCCGAAGTTGTGAAGATGATAGAAAATGTGAGGCATATTGATAATGCACAAATATCATCTGAGAACCAAGCTGAAGTTAGATTATCATCTCAAAGCGAGACCGATAACGACAACATTAACTCCACTTCTTCTCCTTTACCGAAAGGAAGTGAATGA 1872 0.4145 MSKAARLPNYSVNDTTFKGASTETLNWNESFSVCDNWTGVTCNEDRSRVIAIRLPGVRFHGNIPPHTISNLSELQILSLRSNFITGFFPSDFSNLKNLSFLYMQFNNLSGSLPDFSAWKNLTVVNLSSNRFNGSIPVSLSNLTQLSGLNLASNDLSGDIPDLNLSRLQTLNLSNNDLHGTVPSSLRRFPDSAFVGNNVTLGNYIVVPPVPSPVYDASSTSGKRGRLSEAAVLGIVVVGSFLGLVAFGFLMFVCCCARKKDEDDFDDDAFVGKSNKGKMSLEKAVSRNMDANNKLTFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATAVVVKRLKEVAYGKKDFEQYMEIVGSLKHENMVELKAYYYSKDEKLMVYDYYSQGSVSSLLHGKRGEDKVPLDWNTRLRIALGAARGIAHIHVENSGKVVHGNIKSSNIFLNTKQYGCVSDLGLASISTSLALPISRAAGYRAPEVTNTRKAAQPSDVYNFGVVLLELLTGKSPIHTAGGDEFGHLVRWVHSVVREEWTTEVFDLELMRYPNIEEEMVEMLQIAMSCVVRMPDQRPKMSEVVKMIENVRHIDNAQISSENQAEVRLSSQSETDNDNINSTSSPLPKGSE 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00505 623 Gene3D Ribonuclease Inhibitor 117 204 IPR032675 -
Vifa6g00505 623 PANTHER OS05G0588300 PROTEIN 22 593 - -
Vifa6g00505 623 Pfam Protein kinase domain 314 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00505 623 SMART LRR_typ_2 95 117 IPR003591 -
Vifa6g00505 623 SMART LRR_typ_2 71 94 IPR003591 -
Vifa6g00505 623 SMART LRR_typ_2 164 195 IPR003591 -
Vifa6g00505 623 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 386 593 - -
Vifa6g00505 623 FunFam Probable inactive receptor kinase RLK902 14 163 - -
Vifa6g00505 623 SUPERFAMILY L domain-like 25 187 - -
Vifa6g00505 623 ProSiteProfiles Protein kinase domain profile. 311 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00505 623 Gene3D Ribonuclease Inhibitor 13 116 IPR032675 -
Vifa6g00505 623 Gene3D Transferase(Phosphotransferase) domain 1 387 609 - -
Vifa6g00505 623 Gene3D Phosphorylase Kinase; domain 1 264 385 - -
Vifa6g00505 623 MobiDBLite consensus disorder prediction 593 623 - -
Vifa6g00505 623 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Vifa6g00505 623 Pfam Leucine rich repeat 62 108 IPR001611 GO:0005515
Vifa6g00505 623 FunFam pollen receptor-like kinase 1 280 385 - -
Vifa6g00505 623 SUPERFAMILY Protein kinase-like (PK-like) 315 580 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00505 Vifa-Chr6 194900516 194903346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00505 22 603 Receptor kinase-like Gene Family AT4G23740 64.746 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa6g00505 Pkinase 1.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00505 - - gmx:100814524 917.146