Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00504 ATGGAAGAGTTTGTTATGGAGAAAAAACTGATTGGTTTTTCTAACAAAGATGCAACTCATGTTGCGAAAGGAAAACGCACCAAGAGGTTAAGACTTTTATCTCCTTGTGGTGTTGTTTCTACTGTATCTAGTTGTTCAAGTGGTGAAAGCAATACTGATGTTGAAGATGATGAAGAAGATATGGCTAATTGTTTGATTCTCCTTGCTCAAGGAGTAAATCACAAGCAACATGGTGGTGGTGGTGGTGAAGATGAGGATGATGATAACAAAAGGGAAAAGGGTAGTAATGGAAATAAAAAAATAGGTGAAATTGTAACTGCTACTTTGAGTAAAACAAAAGGTGGTTTGTATGTTTATGAATGCAAAACATGTAATAGAAGTTTTCCTTCTTTTCAAGCTTTGGGTGGTCATAGGGCTAGTCACAAAAAGCCTAGGCTCATGGCTGAGGTGAAAAAACCACCGCCATCGCCGCTGTCACAATCATCACAGCAGCAAACTTCATCACATGATTCGCAATCAGTTAAATTACTGATTGCGAATGCGAAGTGCGATGAGTTTGAAGTTGTAGCTGAGAAGCCTCGTGGGCCAGCTATTTCATTTCATATCGGGAATCAAATTTCGAAAGGTATCAACGGAAACAAAGCAAAGATCCATGAGTGTTCCATTTGTGGATCGGAATTCACATCCGGACAAGCATTGGGTGGACATATGAGGAGACATAGAACATCATCGGCGAACACCGCTTCTGTCGCGGTGGTTGATGGAGGAGTTCCGCCACGGAATATTTTACAATTGGATCTTAACCTCCCGGCGCCGGAGGAGGATATCCGGGAAGCTAAGTTTCAGTTTCCGACACAGAAATCTATGGTGATGTCTGCTGCTCCGGCTTTGGTGGATTGTCATTATTAG 909 0.4191 MEEFVMEKKLIGFSNKDATHVAKGKRTKRLRLLSPCGVVSTVSSCSSGESNTDVEDDEEDMANCLILLAQGVNHKQHGGGGGEDEDDDNKREKGSNGNKKIGEIVTATLSKTKGGLYVYECKTCNRSFPSFQALGGHRASHKKPRLMAEVKKPPPSPLSQSSQQQTSSHDSQSVKLLIANAKCDEFEVVAEKPRGPAISFHIGNQISKGINGNKAKIHECSICGSEFTSGQALGGHMRRHRTSSANTASVAVVDGGVPPRNILQLDLNLPAPEEDIREAKFQFPTQKSMVMSAAPALVDCHY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00504 302 SUPERFAMILY beta-beta-alpha zinc fingers 118 240 IPR036236 -
Vifa6g00504 302 PANTHER ZINC FINGER PROTEIN ZAT5 49 287 - -
Vifa6g00504 302 MobiDBLite consensus disorder prediction 155 172 - -
Vifa6g00504 302 MobiDBLite consensus disorder prediction 73 99 - -
Vifa6g00504 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 245 IPR013087 -
Vifa6g00504 302 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Vifa6g00504 302 SMART c2h2final6 119 141 IPR013087 -
Vifa6g00504 302 SMART c2h2final6 218 240 IPR013087 -
Vifa6g00504 302 Pfam C2H2-type zinc finger 118 144 - -
Vifa6g00504 302 Pfam C2H2-type zinc finger 218 242 - -
Vifa6g00504 302 MobiDBLite consensus disorder prediction 135 172 - -
Vifa6g00504 302 Gene3D Classic Zinc Finger 116 240 - -
Vifa6g00504 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Vifa6g00504 302 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Vifa6g00504 302 MobiDBLite consensus disorder prediction 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00504 Vifa-Chr6 194357933 194358841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00504 17 302 C2H2 Transcription Factor Family AT2G28200 39.450 4.01e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g00504 zf-C2H2_6 4.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00504 - - aprc:113858527 288.885