Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa6g00504 | ATGGAAGAGTTTGTTATGGAGAAAAAACTGATTGGTTTTTCTAACAAAGATGCAACTCATGTTGCGAAAGGAAAACGCACCAAGAGGTTAAGACTTTTATCTCCTTGTGGTGTTGTTTCTACTGTATCTAGTTGTTCAAGTGGTGAAAGCAATACTGATGTTGAAGATGATGAAGAAGATATGGCTAATTGTTTGATTCTCCTTGCTCAAGGAGTAAATCACAAGCAACATGGTGGTGGTGGTGGTGAAGATGAGGATGATGATAACAAAAGGGAAAAGGGTAGTAATGGAAATAAAAAAATAGGTGAAATTGTAACTGCTACTTTGAGTAAAACAAAAGGTGGTTTGTATGTTTATGAATGCAAAACATGTAATAGAAGTTTTCCTTCTTTTCAAGCTTTGGGTGGTCATAGGGCTAGTCACAAAAAGCCTAGGCTCATGGCTGAGGTGAAAAAACCACCGCCATCGCCGCTGTCACAATCATCACAGCAGCAAACTTCATCACATGATTCGCAATCAGTTAAATTACTGATTGCGAATGCGAAGTGCGATGAGTTTGAAGTTGTAGCTGAGAAGCCTCGTGGGCCAGCTATTTCATTTCATATCGGGAATCAAATTTCGAAAGGTATCAACGGAAACAAAGCAAAGATCCATGAGTGTTCCATTTGTGGATCGGAATTCACATCCGGACAAGCATTGGGTGGACATATGAGGAGACATAGAACATCATCGGCGAACACCGCTTCTGTCGCGGTGGTTGATGGAGGAGTTCCGCCACGGAATATTTTACAATTGGATCTTAACCTCCCGGCGCCGGAGGAGGATATCCGGGAAGCTAAGTTTCAGTTTCCGACACAGAAATCTATGGTGATGTCTGCTGCTCCGGCTTTGGTGGATTGTCATTATTAG | 909 | 0.4191 | MEEFVMEKKLIGFSNKDATHVAKGKRTKRLRLLSPCGVVSTVSSCSSGESNTDVEDDEEDMANCLILLAQGVNHKQHGGGGGEDEDDDNKREKGSNGNKKIGEIVTATLSKTKGGLYVYECKTCNRSFPSFQALGGHRASHKKPRLMAEVKKPPPSPLSQSSQQQTSSHDSQSVKLLIANAKCDEFEVVAEKPRGPAISFHIGNQISKGINGNKAKIHECSICGSEFTSGQALGGHMRRHRTSSANTASVAVVDGGVPPRNILQLDLNLPAPEEDIREAKFQFPTQKSMVMSAAPALVDCHY | 302 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa6g00504 | 302 | SUPERFAMILY | beta-beta-alpha zinc fingers | 118 | 240 | IPR036236 | - | |
Vifa6g00504 | 302 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 49 | 287 | - | - | |
Vifa6g00504 | 302 | MobiDBLite | consensus disorder prediction | 155 | 172 | - | - | |
Vifa6g00504 | 302 | MobiDBLite | consensus disorder prediction | 73 | 99 | - | - | |
Vifa6g00504 | 302 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 218 | 245 | IPR013087 | - | |
Vifa6g00504 | 302 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 220 | 240 | IPR013087 | - | |
Vifa6g00504 | 302 | SMART | c2h2final6 | 119 | 141 | IPR013087 | - | |
Vifa6g00504 | 302 | SMART | c2h2final6 | 218 | 240 | IPR013087 | - | |
Vifa6g00504 | 302 | Pfam | C2H2-type zinc finger | 118 | 144 | - | - | |
Vifa6g00504 | 302 | Pfam | C2H2-type zinc finger | 218 | 242 | - | - | |
Vifa6g00504 | 302 | MobiDBLite | consensus disorder prediction | 135 | 172 | - | - | |
Vifa6g00504 | 302 | Gene3D | Classic Zinc Finger | 116 | 240 | - | - | |
Vifa6g00504 | 302 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 119 | 146 | IPR013087 | - | |
Vifa6g00504 | 302 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 121 | 141 | IPR013087 | - | |
Vifa6g00504 | 302 | MobiDBLite | consensus disorder prediction | 78 | 98 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa6g00504 | Vifa-Chr6 | 194357933 | 194358841 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa6g00504 | 17 | 302 | C2H2 Transcription Factor Family | AT2G28200 | 39.450 | 4.01e-57 | 184 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa6g00504 | zf-C2H2_6 | 4.1e-11 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa6g00504 | - | - | aprc:113858527 | 288.885 |