Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa6g00494 | ATGGCAAAGAGCTCTGATTCTCAGAAGTATGTTGATGTGTCTAAGGTTCGTCTGGGTTATCAAAGAGAGTTTCGCCGCGCCTATGAGACTCACTCACAGATCTGCTGTGGTTCGACATCTCTCAATCGAACCAGGCCAAGAAATAACCGGAATGTGGTTCATGTTCCTGGACCTAACAGGACAACAAATGATGTTGAAAATATCGTTGTGAATGGTGTTTCGAGTGAAGAAGATGCTAGAAGTAAAGTGGAGGATTTGAAGGTTGAGGCAATAGATGAAATATATCAACCTGGTCGTGAAATTGGGGAGACCAGTAGAGATCGCGGTTTGAAGGTGTCAACGAAAGTGAAAAAGTTCAAACCTGTTTTTTGCAACTTCAAGAAGTTCCCCTCTAAGCTGAAGGACCTGCTAGACTCGAGGATTCTGGATGGATTAAACGTGAAATATGTTCGTGGCATCAGGGTGCGAAAACCCGGAGATAAAGCGCTACTGGGAGTGATAAAAGGCGAAGGAATTGAGTGTTATTGTGATATTTGTAAGGGAGAAAAGGTTGTGAGCCCTGCTGTATTTGAGGTTCATGCTGGAAGTGCAAACAAACGTCCTCCTGAGTATACTTTCCTTGAAAATGGGAATTCTGTTCGTTTTGTGATGAATGCATTTTTGAACAGTCCTTTGGACAAAATGGAGGAATCTGTTTGTGCTGTTCTCGGGGACTTTACTATTAAAAAATCAAAGTTCTGTTTGAACTGTAGAGATGTTAATGTTGTCTCGAACCTGTTCTGCGACTCATGCCAACCTAACCCAACTCCTATGCCCGAGATTACTAATAGCTGTGTTTCACCACCACCACCACCACCACCACCAGCGGTTATATCCGGGACCCCGGAACCAGTTGAGCCTGAAAAGACATTATATAAAGGAATGAAATACAGCGCAGCTAGTGATAAGAGTCAGGGGAAAATAACTAGGAAGGACCAAGGCTTACATAAGTTGGTTTTTGAAGCATTGAAAGATGAAGCTGATGTGACATACATTGCTCGTGGAGAGAGACTATTGGATGGTAAAATAAACAAAAAGAACTATGGAATTATGTGTAGTTGCTGTAACAAAGTGGTTAGCCCTTCTACATTTGAAGCACATGCTGGCTGGGCATCCCGACGCAAGCCTTACCTGCATATATTCGCGGATGGAGTCTCACTACATCAGTTGTCCATTTCCGTGTTGAAAAAGCAGATAATTTCTATGAATGCCGATAGCGATGGTCGCTGCAGTATTTGTGAACAAGGAGGAAGTCTTTTATGCTGTGACGGATGCCCAAGAACTTTTCACTTAGAATGCGTCCCTCTTGAATCCGAACCGGGTTGCATTTGGTACTGCAAATATTGCTGTCATAATGTAAACCTTAAAGAAAGACATGAAGATCGTAAGGAAAATGCTCGGGCAACTAGAAAGGTTGCAGAGTCTGATCTTTTGGGACAGACAACCCAGAGAGGCCCCCTTACGGTAAATGATACCGAGGTTGTCGAAGGAGGATGTCAACTGTGCAGGGAAGATGATTTCGAGCTAGTAGATTTTGGTCCTAGGACAGTAATTATTTGTGACCAGTGTAATAAGGAATATCACATAGGGTGTTTGAAGGATCATAAGATAGTTAACCTAGAGAAATTACCTAAAGAGGACTGGTTCTGCGGCTCGGATTGTCTTCAAGTTCGGACTTTTTTGCAAAATTTAGTGATTCGCGGGGATTTGCCAGTTTCAGATTCCCTCCTAAGTTTGATTAAAAAGAAGCATGAAGAAAAAGGTTTAGAAGTTGATTCTGGTCTTGATGTAAAATGGAGGATTCTTAATTGGAAGTTGCTTGCTTCTGAAGAAATCAGGGCGTTGCTTTCGAAGGCTGTTGCTATCTTTCATGAACAATTTGATCCCATAGTGGATGCTGAAACAGGCGCAGATTTTATTCCATCGATGCTTTATGGGAGGACAGTCAAAGATCAATATTTTGGTGGAATGTATTGTGCAGTGCTCACTGTCAACCAAGTGGTTGTATGCGCGGGGACATTCCGCTTGTTTGGGAGGAAAGTGGCGGAGCTTCCATTAGTTGCAACTAATGCAGCTAGCCAAGGAAAGGGTTACTTCCAAGCCCTGCTTGCCTGCATCGAGGGCATGCTTGGAGAGTTAAAAGTGGGACGGTTATTTTTACCGGCTGCTCATGAAGCCGAATCGTTATGGACTGGGAAATTCGGGTTTATGGCGCTAGATGAAGATGAGATGAATTTTATTACGAGATTGTACCGCTTGATGATGTTTAACGGGGCAGCGTTACTACAGAAGCCGGTTCCTCGCCCCGCTTGA | 2352 | 0.4337 | MAKSSDSQKYVDVSKVRLGYQREFRRAYETHSQICCGSTSLNRTRPRNNRNVVHVPGPNRTTNDVENIVVNGVSSEEDARSKVEDLKVEAIDEIYQPGREIGETSRDRGLKVSTKVKKFKPVFCNFKKFPSKLKDLLDSRILDGLNVKYVRGIRVRKPGDKALLGVIKGEGIECYCDICKGEKVVSPAVFEVHAGSANKRPPEYTFLENGNSVRFVMNAFLNSPLDKMEESVCAVLGDFTIKKSKFCLNCRDVNVVSNLFCDSCQPNPTPMPEITNSCVSPPPPPPPPAVISGTPEPVEPEKTLYKGMKYSAASDKSQGKITRKDQGLHKLVFEALKDEADVTYIARGERLLDGKINKKNYGIMCSCCNKVVSPSTFEAHAGWASRRKPYLHIFADGVSLHQLSISVLKKQIISMNADSDGRCSICEQGGSLLCCDGCPRTFHLECVPLESEPGCIWYCKYCCHNVNLKERHEDRKENARATRKVAESDLLGQTTQRGPLTVNDTEVVEGGCQLCREDDFELVDFGPRTVIICDQCNKEYHIGCLKDHKIVNLEKLPKEDWFCGSDCLQVRTFLQNLVIRGDLPVSDSLLSLIKKKHEEKGLEVDSGLDVKWRILNWKLLASEEIRALLSKAVAIFHEQFDPIVDAETGADFIPSMLYGRTVKDQYFGGMYCAVLTVNQVVVCAGTFRLFGRKVAELPLVATNAASQGKGYFQALLACIEGMLGELKVGRLFLPAAHEAESLWTGKFGFMALDEDEMNFITRLYRLMMFNGAALLQKPVPRPA | 783 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa6g00494 | 783 | MobiDBLite | consensus disorder prediction | 40 | 63 | - | - | |
| Vifa6g00494 | 783 | SUPERFAMILY | FYVE/PHD zinc finger | 509 | 564 | IPR011011 | - | |
| Vifa6g00494 | 783 | Coils | Coil | 469 | 489 | - | - | |
| Vifa6g00494 | 783 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 409 | 508 | IPR013083 | - | |
| Vifa6g00494 | 783 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 509 | 570 | IPR013083 | - | |
| Vifa6g00494 | 783 | SMART | PHD_3 | 422 | 463 | IPR001965 | - | |
| Vifa6g00494 | 783 | SMART | PHD_3 | 511 | 568 | IPR001965 | - | |
| Vifa6g00494 | 783 | ProSiteProfiles | Zinc finger PHD-type profile. | 420 | 465 | IPR019787 | - | |
| Vifa6g00494 | 783 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 662 | 757 | IPR016181 | - | |
| Vifa6g00494 | 783 | ProSitePatterns | Zinc finger PHD-type signature. | 423 | 462 | IPR019786 | - | |
| Vifa6g00494 | 783 | Pfam | Tify domain binding domain | 165 | 218 | IPR032308 | - | |
| Vifa6g00494 | 783 | Pfam | Tify domain binding domain | 361 | 403 | IPR032308 | - | |
| Vifa6g00494 | 783 | PANTHER | AUTOIMMUNE REGULATOR | 73 | 779 | - | - | |
| Vifa6g00494 | 783 | SUPERFAMILY | FYVE/PHD zinc finger | 409 | 469 | IPR011011 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa6g00494 | Vifa-Chr6 | 191249703 | 191255158 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa6g00494 | 129 | 780 | PHD Transcription Factor Family | AT3G53680 | 38.179 | 1.40e-140 | 433 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa6g00494 | - | - | psat:127113027 | 911.368 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa1g02449 | 1 | 392224682 | 392231586 | Vifa6g00494 | 6 | 191249703 | 191255158 | PCT |