Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00482 ATGAGCGGTGCTGGCCGGAAATGGGACCGGAGAGACAACAGAACGTCAAAGAAGCAGAAATTGATTAAGAACGCTGAGGAAGAACTTGAAGCAAAGCTAGGGTTTGATCTTTTCTCAGAAGGGGAAAAGCGACTTGGATGGTTACTCACCTTTTCAACTTCATCTTATGAAGATGAGGATACCCACAAAGCCTACAGTTGCGTTGATCTTTACTTTGTCACACAGGATGGGTCTTCATTCAAGACAAAATACAGATTTCGCCCTTATTTCTATGTAGCTACAAAGAATAAAATGGAGATGGATGTTGATGCATATCTGAGACGACGTTATGAAGGCCAGATTGCAGATATCAAAATTGTAGAAAAGGAAGATCTGGATCTTAAAAACCATTTGTCTGGATTAAGAAAATCTTATTTAAAGATTTCATTTGATACCGTGCAACAACTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATAAGGCGAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTATCGGGGAGAAGCAGAGAACAAAAACTTCAAGATTTTCTAGATTGCATAATTGATCTTCGTGAATATGACGTTCCTTACCATGTTCGCTTTGCTATTGACAACGATATACGGTGTGGCCTGTGGTATGATGTTGCCGTGTCCACTGATGGAGTTACACTTGAGAGAAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTGTTTGTGCATTTGATATCGAGACTACAAAACTTCCGTTGAAGTTTCCTGATGCTGACTATGATTCAGTTATGATGATTTCATATATGGTAGATAGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATTTAGAGTTCACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGAACATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACATATAATGGTGATTTCTTTGACTGGCCATTCCTGGAACGACGGGCAGCCCATCACGGGTTGAAAATGAGTGATGAACTGGGGTTTCAATGTGACATGAATCAAGGGGAATGTCGTGCTAAATTTGCTCCTCATTTAGATTGCTTTGCATGGGTTAAACGTGACAGTTATCTTCCTCAGGGGAGCCAAGGCCTCAAGGCTGTAACAAAAGCCAAGTTGGGATATGATCCAGAGGAGGTGAACCCTGAGGACATGGTACGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGTCAACGTATTACCTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCCACTATCATTCCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGTCATACGAGGCTAATGTTATCTGTCCTAACAAGCACCAATCTGATCCGGAGAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTATATAGGTGGCCATGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGTAATTTTACACTCGAGCCATCTGCCTTTGAGCAATTGATCAACAATCTTGACCGAGATCTACAATATGCTATAAGAGTAGAGGGTAAGATGGATTTGGAATCTGTCTCAAATTATGATGAAGTGAAGGATGCTATCATGGAAAAGCTTGTAAAATTACGAGATTCACCAATACGTGATGAATGCCCCCTCATTTATCATTTGGATGTAGCTGCGATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCTCCGTCAATTGTTACGGACGAGATTTGCACTGCATGTGACTTTAACCGCCCCGGAAAGACTTGTCTGCGCAAGCTTGAATGGGTTTGGCGTGGAGAAACATTCACAGCAAAGAAAAGTGACTATTATCATCTGAAGAAGCAAATTGAGTCAGAGTTTGTCGATGGAGTAAATGAAAGGTCAACAAAATCGTTTCTTGACCTGCCCAAAGCTGAGCAACAATTAAGACTAAAAGAGCGTTTAAAAAAATACTGCCAAAAGGCATATAAACGGGTACTTGACAAACCAGTTACAGAACTCCGTGAAGCTGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGGAGATATGAATATAAAGGCCTTAACAAGGTTTGGAAAGGAAAACTATCAGATGCCAAGGCCAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGACATGGTAGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATTCTTAATTCCTTTTATGGATACGTAATGCGAAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGTGTTGTCACATATACTGGTGCTAAAATAATTCAAAATGCCCGTTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTTGCCTTCCTGGATCGTTTCCAGAAAATTTCACTTTTAAAACAATAGACTCAAAAAGGAAGCTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAACGATCAGTACCAGACGCTCACAGATCCAAATAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTCGATGGACCATACAAGGCAATGATCATACCTGCTTCCAAGGAGGAAGGAATTTTAATTAAGAAGCGATACGCTGTTTTTAATGACGATGGAACTCTTGCAGAGCTCAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAGCTTTTTGACAATTTTCTTCACGGCTCAACCTTAAAGGAATGCTATTCAGAAGTCGCTATAGTGGCAAATCGCTGGCTTGATCTTCTTGATACCCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCGGAATATGGTCAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAATACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTCAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGCTCTATAATTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAGATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGACGATACCTTTAAGTCAATGATCAAGAACGAGAGCTCAAAAAAACATAATGATTCTAAAGGTGTCCACAACATTATGATTGATGAGAGTGTTAATGACTTGGAGGACTTTGGAAACAAGGGCAGGAGTTCTACAGGACCTAGACCAATTATACGGCATTACGAAGCTAACAATGAACAGCATTCAGAGAAGTTCAATGGTCCAGAAGATTTAGAGCAACAACCTATTGACAGGAGTAACATAGTTCATCCACTTTCACTACAAAATGAAATATCATGTGAAAATATCGACAGAACTGTAGATTATCAAGGATGGCTTCAAATGAAAAAGAGAAAGTGGAAAAATATGCTGGGAATGAGAAAGAAGCAAAGGTTGGAGAATTCGAAGAGATCTGACCATTTAAATGGCAGTCTTGAACAAACCAGTGGTAAGTCGAATCACGGCAAAAGTAATGTCAGTTCATATTTTAGAAGGCATGAGGTAGCCTTAACAAGGTGCCACTGGCAGATAATACAACTGGTCTACAGTACACAAGCTGGCCAATTTTTTGCTTGGGTTGTTGTTGACGGAATTATGCTCAAGATTCCTATGTCTGTTCCTAGAGTCTTTTACCTTAACTCTAGATCACCAACCGAAGAATTTTCCGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACATAGCTATAACCTGTTTGAGGTCACAATTAATGAAATACAATATAAAGAAGAAAGCAAAAAACTTGCTGCTCTTCTAGCAGATCCTGATGTTGAGGGAATTTATGAAACCAAGGTGCCACTACAGTTCAACGCTATAGTCCAACTTGGTTGTGTTTGTAAGGTGGATAAAACTGCTAAAAAACGTAGCATACAAGAGCCATGGAGTTTGAGTGAATTGCACATGAAGACCACAACTGAATGTGCTTATCTTGAACAATCAATACCTTTTTTTTACTTATACCACAGCATCTCAGAGGGACGGGCTATATATGTTGGATATTTTCCTGGGTCACATGCAATAACTTTTGTGGTAGTTAATCCCTACCAAAACAAGGACATATCACCAATTTTTCTCGAAAGACAATTCCGCGATGCTTGCAGAGCTTTGTCTATTGAGCCAGCTTTGGGGAATGGCATTACTTTTAATGTGGAATATGTTGCACTTGTCAAGGATGCTGAAGCAGTATTGCAAAGCGCAATAAATGATCACAGGAGTGAACATCACGGGCCTATGGTTGCTGTCATTGAATGCCCTGATGTTCAAATATTAAAACAGGGCATTCGAGCTCTAGATGATTTTCCATGCCTGAGTATTCCTTCTAATGCACGTGATAGTCAGTATCAGATTCTTGGATGGCAACAAGTTGCTGCGAAACTTGGAATGCAACGATGTGCAGCATCGGTCCAGTGGCTCAATGAGAGAATTGCTTTATCAAGATATGCCCATGTACCTCTGGGGAACTTTGCATTTGACTGGCTTATGTTTACAGTGGATACCTTCTTTTCTAGAGCACTGCGTGATAATCAACAGGTACTTTGGATATCTGATGATGGTTATCCAGATTTGGGAGGCAACAATGGTGAAGAGAACTGTTTTTTAGACGAGGTGCAACAACCCGTTTGTACGTTTCCTGGAGCTTATAGAAAAGTTACCATAGAGCTAAAGATACACCACTTGGCTGTAGACGCCCTTTTAAAATGCAACCAAGTTAATGATATGGAAGGAGATGCAGTCACATCTGGAAATGTTTATGCTGATGCAATATTGCAACATCTGTATAGATGGATTTGCAGCCCTCAATCAAAGCTTCATGATCCTGCTCTTCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTTGCATTGTTGTTGGCAGAGTTCCGCAAGTTGGGCGCAACCATTGTATTTGCGAACTTCTCCAAGATTATTATTGACACGGGAAAATATGATTTGTCTACAGCCAAAGCATACTGTGATAGTTTGTTAAAAACTATACAATCTAGAGACCTATTCGAGTGGATTGAGCTTGAGCCACAGCAGTTCTGGTGCTCATTACTATTCATGGACCAGTATAACTACGGTGGAATACCAGCAAAATCCGACGAAGCTATGAATGATGAATCTCAAGTTGACATAATATCCAGTTGGAATATTGCTGAATACTTGCCAAAAAAAATCCAAGACCATTATGTGTTCATAGTTTCTCAATTCATGTATATTCCTTGGAACTATACACGAAAACAATCAGCGATCAGGGCTTCCGCGCAGAATGGAGACTCCTGTACCCCGTCAATTAATATTGGAGCTGCAGAGGTTTTCGAATCAGAAATAACTGGATATATTAAAGAGCAGATAAGCTCTTATTTCACTGACAAACTCCTTGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGGCGGGTAGATCAGAAGCCGACCAGAGTACATCAGCTGGCCTTCCACAGCTTATGGGTGATCAACCTAGGGGGGATGCAGCCTTGGAGTTTATCAAGCATGTCTGTGCGGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTTATGTCATGAGGAAAAATTTGTTAAAATTTGTCCGCGTCAGAGAGTTTGCTCCAGAAGCAGAGTTTCATGATCCTTGTCAATCCTTCATATTACCCAATGTCATCTGCAGCTATTGTAATGACTGTAGAGATTTGGACTTGTGCCGTGATCCGTCTTTATTGACCGAAGAGTGGCATTGTGCTGTACCTCAGTGTGGCCAGCCTTATGACCGTGAGGAGATGGAGAAGGCTCTTCTTCTGATTGCACGACAAAGGGAGCGGCAATACCACGAGCAAGATCTGGTGTGTGTCAGGTGCAACGAGGTGAAAGCTGCACATTTGGCTGAGCAATGTACATGTGCAGGCTCATATAAATGCAAAGAAGATGCGGCGGAATTTCGTAAAAAGATGCGAGTTATCTACAGCATAGCTTCTCGTCAGAAATTTCAACTTCTTGAAGAATGTACTGCCTGGTTGTTAGAACTTAAAATTTAA 6498 0.4086 MSGAGRKWDRRDNRTSKKQKLIKNAEEELEAKLGFDLFSEGEKRLGWLLTFSTSSYEDEDTHKAYSCVDLYFVTQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYEGQIADIKIVEKEDLDLKNHLSGLRKSYLKISFDTVQQLMNVKSDLMHVVERNKAKSDAAEAYESILSGRSREQKLQDFLDCIIDLREYDVPYHVRFAIDNDIRCGLWYDVAVSTDGVTLERRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDSVMMISYMVDRQGYLIINRECVGDDIEDLEFTPKPEFEGCFKVTNVQNEIELLRTWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGLKMSDELGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPEEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYEANVICPNKHQSDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCNFTLEPSAFEQLINNLDRDLQYAIRVEGKMDLESVSNYDEVKDAIMEKLVKLRDSPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFTAKKSDYYHLKKQIESEFVDGVNERSTKSFLDLPKAEQQLRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSDAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCCLPGSFPENFTFKTIDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDNFLHGSTLKECYSEVAIVANRWLDLLDTQGKDIADSELLDYISESSTMSKSLAEYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFQTDAEVMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMIKNESSKKHNDSKGVHNIMIDESVNDLEDFGNKGRSSTGPRPIIRHYEANNEQHSEKFNGPEDLEQQPIDRSNIVHPLSLQNEISCENIDRTVDYQGWLQMKKRKWKNMLGMRKKQRLENSKRSDHLNGSLEQTSGKSNHGKSNVSSYFRRHEVALTRCHWQIIQLVYSTQAGQFFAWVVVDGIMLKIPMSVPRVFYLNSRSPTEEFSGKRVNKTLPHGRHSYNLFEVTINEIQYKEESKKLAALLADPDVEGIYETKVPLQFNAIVQLGCVCKVDKTAKKRSIQEPWSLSELHMKTTTECAYLEQSIPFFYLYHSISEGRAIYVGYFPGSHAITFVVVNPYQNKDISPIFLERQFRDACRALSIEPALGNGITFNVEYVALVKDAEAVLQSAINDHRSEHHGPMVAVIECPDVQILKQGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKLGMQRCAASVQWLNERIALSRYAHVPLGNFAFDWLMFTVDTFFSRALRDNQQVLWISDDGYPDLGGNNGEENCFLDEVQQPVCTFPGAYRKVTIELKIHHLAVDALLKCNQVNDMEGDAVTSGNVYADAILQHLYRWICSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCDSLLKTIQSRDLFEWIELEPQQFWCSLLFMDQYNYGGIPAKSDEAMNDESQVDIISSWNIAEYLPKKIQDHYVFIVSQFMYIPWNYTRKQSAIRASAQNGDSCTPSINIGAAEVFESEITGYIKEQISSYFTDKLLGVVRDIVLHMKGAGRSEADQSTSAGLPQLMGDQPRGDAALEFIKHVCAVLALDQSVQHDVYVMRKNLLKFVRVREFAPEAEFHDPCQSFILPNVICSYCNDCRDLDLCRDPSLLTEEWHCAVPQCGQPYDREEMEKALLLIARQRERQYHEQDLVCVRCNEVKAAHLAEQCTCAGSYKCKEDAAEFRKKMRVIYSIASRQKFQLLEECTAWLLELKI 2165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00482 2165 SUPERFAMILY DNA/RNA polymerases 487 1116 IPR043502 -
Vifa6g00482 2165 FunFam DNA polymerase epsilon catalytic subunit 754 938 - -
Vifa6g00482 2165 MobiDBLite consensus disorder prediction 1272 1286 - -
Vifa6g00482 2165 SMART polmehr3 240 843 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa6g00482 2165 FunFam DNA polymerase epsilon catalytic subunit 241 469 - -
Vifa6g00482 2165 Gene3D - 942 1126 IPR042087 -
Vifa6g00482 2165 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 1730 2162 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Vifa6g00482 2165 SMART DUF1744_2 1511 1850 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vifa6g00482 2165 Pfam DNA polymerase family B, exonuclease domain 74 401 IPR006133 -
Vifa6g00482 2165 CDD DNA_polB_epsilon_exo 241 444 - -
Vifa6g00482 2165 CDD POLBc_epsilon 504 1123 - -
Vifa6g00482 2165 FunFam DNA polymerase epsilon catalytic subunit 56 228 - -
Vifa6g00482 2165 Gene3D Palm domain of DNA polymerase 756 938 IPR023211 -
Vifa6g00482 2165 MobiDBLite consensus disorder prediction 1287 1304 - -
Vifa6g00482 2165 Gene3D DNA Polymerase, chain B, domain 1 52 228 - -
Vifa6g00482 2165 Pfam DNA polymerase family B 757 1071 IPR006134 GO:0000166|GO:0003677
Vifa6g00482 2165 SUPERFAMILY Ribonuclease H-like 58 468 IPR012337 -
Vifa6g00482 2165 Pfam Domain of unknown function (DUF1744) 1732 1850 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vifa6g00482 2165 Pfam Domain of unknown function (DUF1744) 1531 1731 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vifa6g00482 2165 Gene3D - 239 469 IPR036397 GO:0003676
Vifa6g00482 2165 FunFam DNA polymerase epsilon catalytic subunit 942 1126 - -
Vifa6g00482 2165 MobiDBLite consensus disorder prediction 1270 1304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00482 Vifa-Chr6 186000655 186027404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00482 4 2161 Core DNA Replication Machinery Family AT2G27120 66.727 0.0 2974
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00482 K02324 - gmx:100812003 3687.5