Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00481 ATGAGCGGTGCTGGCCGGAAATGGGACCGGAGAGACAACAGAACGTCAAAGAAGCAGAAATTGATTAAGAACGCTGAGGAAGAACTTGAAGCAAAGCTAGGGTTTGATCTTTTCTCAGAAGGGGAAAAGCGACTTGGATGGTTACTCACCTTTTCAACTTCATCTTATGAAGATGAGGATACCCACAAAGCCTACAGTTGCGTTGATCTTTACTTTGTCACACAGGATGGGTCTTCATTCAAGACAAAATACAGATTTCGCCCTTATTTCTATGTAGCTACAAAGAATAAAATGGAGATGGATGTTGATGCATATCTGAGACGACGTTATGAAGGCCAGATTGCAGATATCAAAATTGTAGAAAAGGAAGATCTGGATCTTAAAAACCATTTGTCTGGATTAAGAAAATCTTATTTAAAGATTTCATTTGATACCGTGCAACAACTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATAAGGCGAAGTCTGATGCTGCAGAAGCCTATGAGTCCATATTATCGGGGAGAAGAGAACAAAAACTTCAAGATTTTCTAGATTGCATAATTGATCTTCGTGAATATGACGTTCCTTACCATGTTCGCTTTGCTATTGACAACGATATACGGTGTGGCCTGTGGTATGATGTTGCCGTGTCCACTGATGGAGTTACACTTGAGAGAAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTGTTTGTGCATTTGATATCGAGACTACAAAACTTCCGTTGAAGTTTCCTGATGCTGACTATGATTCAGTTATGATGATTTCATATATGGTAGATAGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGATGATATAGAGGATTTAGAGTTCACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGAACATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACATATAATGGTGATTTCTTTGACTGGCCATTCCTGGAACGACGGGCAGCCCATCACGGGTTGAAAATGAGTGATGAACTGGGGTTTCAATGTGACATGAATCAAGGGGAATGTCGTGCTAAATTTGCTCCTCATTTAGATTGCTTTGCATGGGTTAAACGTGACAGTTATCTTCCTCAGGGGAGCCAAGGCCTCAAGGCTGTAACAAAAGCCAAGTTGGGATATGATCCAGAGGAGGTGAACCCTGAGGACATGGTACGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGTCAACGTATTACCTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCCACTATCATTCCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGTCATACGAGGCTAATGTTATCTGTCCTAACAAGCACCAATCTGATCCGGAGAAGTTTTATAAGAATCATCTTCTTGAGAGTGAGACGTATATAGGTGGCCATGTTGAATGCCTAGAAAGTGGTGTATTTAGATCTGATATTCCATGTAATTTTACACTCGAGCCATCTGCCTTTGAGCAATTGATCAACAATCTTGACCGAGATCTACAATATGCTATAAGAGTAGAGGGTAAGATGGATTTGGAATCTGTCTCAAATTATGATGAAGTGAAGGATGCTATCATGGAAAAGCTTGTAAAATTACGAGATTCACCAATACGTGATGAATGCCCCCTCATTTATCATTTGGATGTAGCTGCGATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCTCCGTCAATTGTTACGGACGAGATTTGCACTGCATGTGACTTTAACCGCCCCGGAAAGACTTGTCTGCGCAAGCTTGAATGGGTTTGGCGTGGAGAAACATTCACAGCAAAGAAAAGTGACTATTATCATCTGAAGAAGCAAATTGAGTCAGAGTTTGTCGATGGAGTAAATGAAAGGTCAACAAAATCGTTTCTTGACCTGCCCAAAGCTGAGCAACAATTAAGACTAAAAGAGCGTTTAAAAAAATACTGCCAAAAGGCATATAAACGGGTACTTGACAAACCAGTTACAGAACTCCGTGAAGCTGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGGAGATATGAATATAAAGGCCTTAACAAGGTTTGGAAAGGAAAACTATCAGATGCCAAGGCCAGTGGAAATTCTATGAAGATCCAGGAAGCACAAGACATGGTAGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATTCTTAATTCCTTTTATGGATACGTAATGCGAAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGTGTTGTCACATATACTGGTGCTAAAATAATTCAAAATGCCCGTTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTTGCCTTCCTGGATCGTTTCCAGAAAATTTCACTTTTAAAACAATAGACTCAAAAAGGAAGCTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAACGATCAGTACCAGACGCTCACAGATCCAAATAGGAAAACTTATACAACTCATAGTGAATGCTCTATTGAATTTGAGGTCGATGGACCATACAAGGCAATGATCATACCTGCTTCCAAGGAGGAAGGAATTTTAATTAAGAAGCGATACGCTGTTTTTAATGACGATGGAACTCTTGCAGAGCTCAAAGGTTTTGAGATCAAGCGCAGAGGTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAGCTTTTTGACAATTTTCTTCACGGCTCAACCTTAAAGGAATGCTATTCAGAAGTCGCTATAGTGGCAAATCGCTGGCTTGATCTTCTTGATACCCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCGGAATATGGTCAGCAGAAGTCTTGTGCTGTTACCACTGCTAAACGTCTTGCTGATTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAATACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTCAAACTGATGCTGAAGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGGCATTCGCTCTATAATTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAGATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTTGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAAAGAAAAATAGACGATACCTTTAAGTCAATGATCAAGAACGAGAGCTCAAAAAAACATAATGATTCTAAAGGTGTCCACAACATTATGATTGATGAGAGTGTTAATGACTTGGAGGACTTTGGAAACAAGGGCAGGAGTTCTACAGGACCTAGACCAATTATACGGCATTACGAAGCTAACAATGAACAGCATTCAGAGAAGTTCAATGGTCCAGAAGATTTAGAGCAACAACCTATTGACAGGAGTAACATAGTTCATCCACTTTCACTACAAAATGAAATATCATGTGAAAATATCGACAGAACTGTAGATTATCAAGGATGGCTTCAAATGAAAAAGAGAAAGTGGAAAAATATGCTGGGAATGAGAAAGAAGCAAAGGTTGGAGAATTCGAAGAGATCTGACCATTTAAATGGCAGTCTTGAACAAACCAGTGGTAAGTCGAATCACGGCAAAAGTAATGTCAGTTCATATTTTAGAAGGCATGAGGTAGCCTTAACAAGGTGCCACTGGCAGATAATACAACTGGTCTACAGTACACAAGCTGGCCAATTTTTTGCTTGGGTTGTTGTTGACGGAATTATGCTCAAGATTCCTATGTCTGTTCCTAGAGTCTTTTACCTTAACTCTAGATCACCAACCGAAGAATTTTCCGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGACATAGCTATAACCTGTTTGAGGTCACAATTAATGAAATACAATATAAAGAAGAAAGCAAAAAACTTGCTGCTCTTCTAGCAGATCCTGATGTTGAGGGAATTTATGAAACCAAGGTGCCACTACAGTTCAACGCTATAGTCCAACTTGGTTGTGTTTGTAAGGTGGATAAAACTGCTAAAAAACGTAGCATACAAGAGCCATGGAGTTTGAGTGAATTGCACATGAAGACCACAACTGAATGTGCTTATCTTGAACAATCAATACCTTTTTTTTACTTATACCACAGCATCTCAGAGGGACGGGCTATATATGTTGGATATTTTCCTGGGTCACATGCAATAACTTTTGTGGTAGTTAATCCCTACCAAAACAAGGACATATCACCAATTTTTCTCGAAAGACAATTCCGCGATGCTTGCAGAGCTTTGTCTATTGAGCCAGCTTTGGGGAATGGCATTACTTTTAATGTGGAATATGTTGCACTTGTCAAGGATGCTGAAGCAGTATTGCAAAGCGCAATAAATGATCACAGGAGTGAACATCACGGGCCTATGGTTGCTGTCATTGAATGCCCTGATGTTCAAATATTAAAACAGGGCATTCGAGCTCTAGATGATTTTCCATGCCTGAGTATTCCTTCTAATGCACGTGATAGTCAGTATCAGATTCTTGGATGGCAACAAGTTGCTGCGAAACTTGGAATGCAACGATGTGCAGCATCGGTCCAGTGGCTCAATGAGAGAATTGCTTTATCAAGATATGCCCATGTACCTCTGGGGAACTTTGCATTTGACTGGCTTATGTTTACAGTGGATACCTTCTTTTCTAGAGCACTGCGTGATAATCAACAGGTACTTTGGATATCTGATGATGGTTATCCAGATTTGGGAGGCAACAATGGTGAAGAGAACTGTTTTTTAGACGAGGTGCAACAACCCGTTTGTACGTTTCCTGGAGCTTATAGAAAAGTTACCATAGAGCTAAAGATACACCACTTGGCTGTAGACGCCCTTTTAAAATGCAACCAAGTTAATGATATGGAAGGAGATGCAGTCACATCTGGAAATGTTTATGCTGATGCAATATTGCAACATCTGTATAGATGGATTTGCAGCCCTCAATCAAAGCTTCATGATCCTGCTCTTCACCAGCTACTCCACAAGGTCATGCAAAAGGTCTTTGCATTGTTGTTGGCAGAGTTCCGCAAGTTGGGCGCAACCATTGTATTTGCGAACTTCTCCAAGATTATTATTGACACGGGAAAATATGATTTGTCTACAGCCAAAGCATACTGTGATAGTTTGTTAAAAACTATACAATCTAGAGACCTATTCGAGTGGATTGAGCTTGAGCCACAGCAGTTCTGGTGCTCATTACTATTCATGGACCAGTATAACTACGGTGGAATACCAGCAAAATCCGACGAAGCTATGAATGATGAATCTCAAGTTGACATAATATCCAGTTGGAATATTGCTGAATACTTGCCAAAAAAAATCCAAGACCATTATGTGTTCATAGTTTCTCAATTCATGTATATTCCTTGGAACTATACACGAAAACAATCAGCGATCAGGGCTTCCGCGCAGAATGGAGACTCCTGTACCCCGTCAATTAATATTGGAGCTGCAGAGGTTTTCGAATCAGAAATAACTGGATATATTAAAGAGCAGATAAGCTCTTATTTCACTGACAAACTCCTTGGAGTTGTTCGTGATATTGTTCTTCATATGAAGGGGGCGGGTAGATCAGAAGCCGACCAGAGTACATCAGCTGGCCTTCCACAGCTTATGGGTGATCAACCTAGGGGGGATGCAGCCTTGGAGTTTATCAAGCATGTCTGTGCGGTCCTTGCCCTCGACCAAAGTGTGCAGCATGATGTTTATGTCATGAGGAAAAATTTGTTAAAATTTGTCCGCGTCAGAGAGTTTGCTCCAGAAGCAGAGTTTCATGATCCTTGTCAATCCTTCATATTACCCAATGTCATCTGCAGCTATTGTAATGACTGTAGAGATTTGGACTTGTGCCGTGATCCGTCTTTATTGACCGAAGAGTGGCATTGTGCTGTACCTCAGTGTGGCCAGCCTTATGACCGTGAGGAGATGGAGAAGGCTCTTCTTCTGATTGCACGACAAAGGGAGCGGCAATACCACGAGCAAGATCTGGTGTGTGTCAGGTGCAACGAGGTGAAAGCTGCACATTTGGCTGAGCAATGTACATGTGCAGGCTCATATAAATGCAAAGAAGATGCGGCGGAATTTCGTAAAAAGATGCGAGTTATCTACAGCATAGCTTCTCGTCAGAAATTTCAACTTCTTGAAGAATGTACTGCCTGGTTGTTAGAACTTAAAATTTAA 6495 0.4085 MSGAGRKWDRRDNRTSKKQKLIKNAEEELEAKLGFDLFSEGEKRLGWLLTFSTSSYEDEDTHKAYSCVDLYFVTQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYEGQIADIKIVEKEDLDLKNHLSGLRKSYLKISFDTVQQLMNVKSDLMHVVERNKAKSDAAEAYESILSGRREQKLQDFLDCIIDLREYDVPYHVRFAIDNDIRCGLWYDVAVSTDGVTLERRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDSVMMISYMVDRQGYLIINRECVGDDIEDLEFTPKPEFEGCFKVTNVQNEIELLRTWFSHMQEVKPGIYVTYNGDFFDWPFLERRAAHHGLKMSDELGFQCDMNQGECRAKFAPHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPEEVNPEDMVRFAKEKPQMMASYSVSDAVSTYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQSYEANVICPNKHQSDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPCNFTLEPSAFEQLINNLDRDLQYAIRVEGKMDLESVSNYDEVKDAIMEKLVKLRDSPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFTAKKSDYYHLKKQIESEFVDGVNERSTKSFLDLPKAEQQLRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSDAKASGNSMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCCLPGSFPENFTFKTIDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPNRKTYTTHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDNFLHGSTLKECYSEVAIVANRWLDLLDTQGKDIADSELLDYISESSTMSKSLAEYGQQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFQTDAEVMKFYVRKWCKVSSDVGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKIDDTFKSMIKNESSKKHNDSKGVHNIMIDESVNDLEDFGNKGRSSTGPRPIIRHYEANNEQHSEKFNGPEDLEQQPIDRSNIVHPLSLQNEISCENIDRTVDYQGWLQMKKRKWKNMLGMRKKQRLENSKRSDHLNGSLEQTSGKSNHGKSNVSSYFRRHEVALTRCHWQIIQLVYSTQAGQFFAWVVVDGIMLKIPMSVPRVFYLNSRSPTEEFSGKRVNKTLPHGRHSYNLFEVTINEIQYKEESKKLAALLADPDVEGIYETKVPLQFNAIVQLGCVCKVDKTAKKRSIQEPWSLSELHMKTTTECAYLEQSIPFFYLYHSISEGRAIYVGYFPGSHAITFVVVNPYQNKDISPIFLERQFRDACRALSIEPALGNGITFNVEYVALVKDAEAVLQSAINDHRSEHHGPMVAVIECPDVQILKQGIRALDDFPCLSIPSNARDSQYQILGWQQVAAKLGMQRCAASVQWLNERIALSRYAHVPLGNFAFDWLMFTVDTFFSRALRDNQQVLWISDDGYPDLGGNNGEENCFLDEVQQPVCTFPGAYRKVTIELKIHHLAVDALLKCNQVNDMEGDAVTSGNVYADAILQHLYRWICSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSTAKAYCDSLLKTIQSRDLFEWIELEPQQFWCSLLFMDQYNYGGIPAKSDEAMNDESQVDIISSWNIAEYLPKKIQDHYVFIVSQFMYIPWNYTRKQSAIRASAQNGDSCTPSINIGAAEVFESEITGYIKEQISSYFTDKLLGVVRDIVLHMKGAGRSEADQSTSAGLPQLMGDQPRGDAALEFIKHVCAVLALDQSVQHDVYVMRKNLLKFVRVREFAPEAEFHDPCQSFILPNVICSYCNDCRDLDLCRDPSLLTEEWHCAVPQCGQPYDREEMEKALLLIARQRERQYHEQDLVCVRCNEVKAAHLAEQCTCAGSYKCKEDAAEFRKKMRVIYSIASRQKFQLLEECTAWLLELKI 2164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00481 2164 FunFam DNA polymerase epsilon catalytic subunit 941 1125 - -
Vifa6g00481 2164 Pfam DNA polymerase family B 756 1070 IPR006134 GO:0000166|GO:0003677
Vifa6g00481 2164 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Vifa6g00481 2164 Pfam Domain of unknown function (DUF1744) 1530 1730 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vifa6g00481 2164 Pfam Domain of unknown function (DUF1744) 1731 1849 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Vifa6g00481 2164 SUPERFAMILY Ribonuclease H-like 58 467 IPR012337 -
Vifa6g00481 2164 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Vifa6g00481 2164 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vifa6g00481 2164 MobiDBLite consensus disorder prediction 1269 1303 - -
Vifa6g00481 2164 Gene3D - 238 468 IPR036397 GO:0003676
Vifa6g00481 2164 MobiDBLite consensus disorder prediction 1271 1285 - -
Vifa6g00481 2164 Gene3D DNA Polymerase, chain B, domain 1 52 227 - -
Vifa6g00481 2164 Gene3D - 941 1125 IPR042087 -
Vifa6g00481 2164 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Vifa6g00481 2164 FunFam DNA polymerase epsilon catalytic subunit 723 798 - -
Vifa6g00481 2164 SUPERFAMILY DNA/RNA polymerases 486 1115 IPR043502 -
Vifa6g00481 2164 Gene3D Palm domain of DNA polymerase 755 937 IPR023211 -
Vifa6g00481 2164 CDD DNA_polB_epsilon_exo 240 443 - -
Vifa6g00481 2164 CDD POLBc_epsilon 503 1122 - -
Vifa6g00481 2164 FunFam DNA polymerase epsilon catalytic subunit 753 937 - -
Vifa6g00481 2164 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 1729 2161 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Vifa6g00481 2164 MobiDBLite consensus disorder prediction 1286 1303 - -
Vifa6g00481 2164 SMART DUF1744_2 1510 1849 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00481 Vifa-Chr6 186000655 186027404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00481 4 2160 Core DNA Replication Machinery Family AT2G27120 66.757 0.0 2979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00481 K02324 - gmx:100812003 3692.12