Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00461 ATGGCTATTGCTGGTTTGCACAGTGTGTCTATGCTGGATTCTTCTTTGTTGAGGGACTCGCAGTCTCAGGCGTCTAGAAGGAGGGGAGATGGAAGAAGGGGTAGCACTCGGTCGTCTTCACTTTTGCACATGTGGCGAGAGATTGAGGATGAACATGCGGTGAGTCAAGTTCAAGGTAGCAATGGGTTGATTGCGGATCTTTCATTAGAAGATACACCTGATAGCCCAGAGATAGGACAAAGGCATGGTTTGGACGATGCTGTTTTTGGTGAGAATGAGTCGGAAACATGGTCACAGTCACAAAGTCAGAATGAGTCACATGATGATCATGAGGATTTAAATAATTCTAGCTGTGAAAATTCTTCTGTTTTTGGAGAAGTTGAAAGGGAAAGAGTGAGACGAATTTTCAGGGAATGGATGAATAGCGGATCTAGGGATTGTGGATCAACCATTTCCCGAAGAAGTAGTAGTCCAAGGAGAGAATGGCTTGGAGAAACTGAACAGGAAAGGGTGAGAGTTATAAGGGAGTGGGTACAAATGAGCAGCCAGCAGAGAAATGTTTCTTCTGGGGAGAACAGGGAACAACTGTGTGCTGAAATTGGTACACAAATTGAACGTGTGCGTGATAGATTTGTGGTTAACAGTGGTGGCGGCCAAAGTGAACATATACTGAGGGGTATGCGTAAAATACGTGGCAGGCAGGTTATGCTCGATATGCTTAAGAAGGCTGACAGGGAAAGGCAGAGAGAAATTCAGGAGTTGCTGGACCATCAGGCTGTATCTCGTTTTCCCCATCGCAACCGCATTCAGGCATTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCCACTGATCATAATAGGTCCACATCTGTAGCAGAAAGTGAATTAGGTCTATTGAGGCGAAAGCAAACAGTATCAGGTCTGAGGGAAGGGTTCTTCTCTAGAAAGGACAGTACCGGTTCCAGTCAAACAACCAGCAACCTATCTGACACCTCATCAAACATTGATGTTGATTTTAATACAAATGAACAAGCCGGAGAAAGCAGTTCATGTATTGTTGTTGGAGATAATAGTGCTGGGATATCTGGTGGCCACTGGCTAGAAGGAACTACCTGTGAGAGTTTTGATTTGCAAGAATCTATTACTGCCGATGCAGAAGGAGACCAGTTGCAGTGTTTGCAAATTGAATCAGTAGATGGGCAGTCATCAGTCAGTGTTGTGTGTGAAAGAAGAAATGACACTGGGCAAAATGTTGATATGGTGGAAATCAGAGATACAGCTAATGAACTTATCCAACAAAGCTTACAAATTGTTGATTCAGAGCATAGCAATATTCAGGAATTCAGCGAGGTGCACATTGAGCAATCTGAGCTGGGTGATATAAGTATTGATGAAATTTATTCATCGAATCAGATTGGTTATCCAGAGGGCAATGGTGTCGATAATGTTAATTATGGATCCAGTGCTCTAGAAGAACCACTGGAAGATATTGTTGAAACTGAAGGAAATGGCTGGCAACGGAGTAACACTGAATGGAGAAATAACACTGATGAAGGAGTGGATGATAATCAGCTCAGCAATACTGCAAATGAGTGGCCTGAAAACATTTGGGCAAATGAGGATGGAGAAAATCCTCGTCTGCCAGAAGCTTCTGAAGTGTGGCAAGAGGATGGTGGCTTCCAAGAAGCAGTGGAAAATTGGTTGGGAGGACCTTCTAACAATGAAACTGCTCCAGGTGGTAGAGTTAATAATTTTTATTTTCCTGATGATGACAATGTATACAGTGTTGAACTCAGGGAACTTCACAGTAGGAGACGCGTCTCTAATCTTCTTGGAAGTAGTTTCCGTGAGAATCTTGACCAATTGATACAATCATATGTTGAAAGACAAGGTCATGCAAACATGGAGTGGGATATGGAAGAAGCAACCCCTTCGGCTGCTCTAGTAGAACAGAACCTCGAGCATCCGCGGAGAGATCAGATTGTTGATCAAGAGACTACTATTAATAGTTCACCTGACTTGCCCTCTTTGCATACACCTCCTACTCCACCTCTTTGGGATCAGCATCGCCATGATGATAACTGGCCACACAATGATGATTTGGAGATTATTAATGACTTGAGACTTGACATGGCTAGATTACATCAAAGAATGAATAGTATGCAGAAGATGCTTGAGACATGTATGGATATGCAGCTTGAATTGCAGCGCTCAATAAGACAAGAAGTTTCTGCGGCCCTAAATCGCTCAGGTGATTCACCAGGAATACATGACTGCAATTCACCAGATGACAGTTCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATTTGCGGCGAAGGCAATATTGATTCTTTGTTGTACAGATGTGGTCACTTGTGCACATGTTCAAAATGTGCCAATGAGTTGCTTCAAAGTAGAAGGAAATGCCCAATGTGTCAAGCCCCTGTTTTGGAGGTGATACGTACTTATTCTATACTATAA 2490 0.4297 MAIAGLHSVSMLDSSLLRDSQSQASRRRGDGRRGSTRSSSLLHMWREIEDEHAVSQVQGSNGLIADLSLEDTPDSPEIGQRHGLDDAVFGENESETWSQSQSQNESHDDHEDLNNSSCENSSVFGEVERERVRRIFREWMNSGSRDCGSTISRRSSSPRREWLGETEQERVRVIREWVQMSSQQRNVSSGENREQLCAEIGTQIERVRDRFVVNSGGGQSEHILRGMRKIRGRQVMLDMLKKADRERQREIQELLDHQAVSRFPHRNRIQALLRGRFLRNDRSTDHNRSTSVAESELGLLRRKQTVSGLREGFFSRKDSTGSSQTTSNLSDTSSNIDVDFNTNEQAGESSSCIVVGDNSAGISGGHWLEGTTCESFDLQESITADAEGDQLQCLQIESVDGQSSVSVVCERRNDTGQNVDMVEIRDTANELIQQSLQIVDSEHSNIQEFSEVHIEQSELGDISIDEIYSSNQIGYPEGNGVDNVNYGSSALEEPLEDIVETEGNGWQRSNTEWRNNTDEGVDDNQLSNTANEWPENIWANEDGENPRLPEASEVWQEDGGFQEAVENWLGGPSNNETAPGGRVNNFYFPDDDNVYSVELRELHSRRRVSNLLGSSFRENLDQLIQSYVERQGHANMEWDMEEATPSAALVEQNLEHPRRDQIVDQETTINSSPDLPSLHTPPTPPLWDQHRHDDNWPHNDDLEIINDLRLDMARLHQRMNSMQKMLETCMDMQLELQRSIRQEVSAALNRSGDSPGIHDCNSPDDSSKWECVRKGLCCICGEGNIDSLLYRCGHLCTCSKCANELLQSRRKCPMCQAPVLEVIRTYSIL 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00461 829 SUPERFAMILY RING/U-box 776 823 - -
Vifa6g00461 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 764 827 IPR013083 -
Vifa6g00461 829 ProSiteProfiles Zinc finger RING-type profile. 777 816 IPR001841 -
Vifa6g00461 829 Coils Coil 705 725 - -
Vifa6g00461 829 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 829 - -
Vifa6g00461 829 Pfam Zinc finger, C3HC4 type (RING finger) 774 821 - -
Vifa6g00461 829 MobiDBLite consensus disorder prediction 92 122 - -
Vifa6g00461 829 CDD mRING-HC-C3HC5_NEU1 777 826 - -
Vifa6g00461 829 MobiDBLite consensus disorder prediction 311 336 - -
Vifa6g00461 829 MobiDBLite consensus disorder prediction 502 528 - -
Vifa6g00461 829 MobiDBLite consensus disorder prediction 15 41 - -
Vifa6g00461 829 MobiDBLite consensus disorder prediction 316 336 - -
Vifa6g00461 829 MobiDBLite consensus disorder prediction 503 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00461 Vifa-Chr6 180997033 181002228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00461 777 823 C3H Transcription Factor Family AT3G06140 42.553 2.12e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00461 - - gmx:100801329 1107.82