Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00460 ATGAGATTCTACAACCGCAGGTTGCTCCTACAGTACGAGGATGTTCCAATCTCAACACCCCCTCAAATCCAACCCACCACCGAATCGAAAGCCGCATCTTCACCGTCCATTCCAACCATTCCATCAAGAACAAGCACAAGCCCTTTAAATCTACCGCTACCGATACATCCGATTTTCTCTTCCAACGTAGCCTACTCCTTCCTCCTCATCTTCTCCACCTTCTTCTTCGCGGGCTTCGTCATCTTGTCAATCCGCGAAGTTTCATCCCGGCGCCGGCGTGGGCTTCCTGCGCAACGGGGGTTGGATCCCGCCGCCGTGAAGGCTCTGCCGGTTTGTTCGTACGAGGAGGATACGAAGCAGCCGGACTGTGCGATTTGTTTGGAGGAGTTTCAAGAATGTGATGAAGTCAAGATTGTTCCGTACTGTAGGCACGTGTTTCATCCGGAATGTATTGACACGTGGCTTTCTTCGCACGTGACTTGTCCTATTTGCAGGTGCGTTATTAAAGTTTGCGGTGGGAGTGTCGATCAAAATGCCCAAAGATCAACGGTGGAGAATGGAAGTTGA 567 0.5097 MRFYNRRLLLQYEDVPISTPPQIQPTTESKAASSPSIPTIPSRTSTSPLNLPLPIHPIFSSNVAYSFLLIFSTFFFAGFVILSIREVSSRRRRGLPAQRGLDPAAVKALPVCSYEEDTKQPDCAICLEEFQECDEVKIVPYCRHVFHPECIDTWLSSHVTCPICRCVIKVCGGSVDQNAQRSTVENGS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00460 188 CDD RING-H2_EL5-like 122 165 - -
Vifa6g00460 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 170 IPR013083 -
Vifa6g00460 188 FunFam E3 ubiquitin-protein ligase ATL6 87 170 - -
Vifa6g00460 188 SUPERFAMILY RING/U-box 108 171 - -
Vifa6g00460 188 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Vifa6g00460 188 MobiDBLite consensus disorder prediction 19 43 - -
Vifa6g00460 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 41 178 - -
Vifa6g00460 188 SMART ring_2 123 164 IPR001841 -
Vifa6g00460 188 Pfam Ring finger domain 122 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00460 Vifa-Chr6 180435444 180436010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00460 98 165 C3H Transcription Factor Family AT2G27940 57.143 2.01e-24 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00460 - K10664 mtr:25492360 240.736