Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00456 ATGGAATTAATGTCGATAACACCACCGTGGCTTGAACGATTATTATCAACCACATTCTTCTCTTCCTGCAAAACTCACATCAACGCGCCGAGAAACGAGTGTAACATGTATTGTCTGGATTGTATGGAATCATTCTGTTTCTATTGCAAGCAATCATGGCACAACGATCATGGAGTAATTCAAATACGAAGATCGTCTTATCATGATGTTGTGAGGGTGGCTGAGATTCACAAGGTATTGGATATAAGTGGCGTTCAAACTTATGTGATTAACAGTGCTAGAGTGATTTTTCTTAATGAGAGGCCACAGAACCAGATTAAGACTAGTAATGCTGTTATTAGTGCAACTAAAACTAATTCACATTTGTGTGAAATTTGCACTAGATATCTATTGGACCCTTTTCGTTTCTGTTCTTTGGGTTGCAAGCTTGTAGGAATAAAGAAAAATGGGAATGCAAGCTTTATCTTAAGCACAAAGAAAGAGGAGGAAATAGGGAAAATGCAGGAAAGAAGGTTAGTATCAAAAGAAGAAGAGGAAGAAATATTAATAATGCGTGAAGGAATCCACAAACAACAAGTATACAAAAGCACGTCTTCTCCTTATTCATCTCAACAAGCTTGTTCAAATTCAAGGAGAAGAAAGGGAACACCTCATAGAGCACCTTTAGGACCCTAA 675 0.3763 MELMSITPPWLERLLSTTFFSSCKTHINAPRNECNMYCLDCMESFCFYCKQSWHNDHGVIQIRRSSYHDVVRVAEIHKVLDISGVQTYVINSARVIFLNERPQNQIKTSNAVISATKTNSHLCEICTRYLLDPFRFCSLGCKLVGIKKNGNASFILSTKKEEEIGKMQERRLVSKEEEEEILIMREGIHKQQVYKSTSSPYSSQQACSNSRRRKGTPHRAPLGP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00456 224 ProSiteProfiles Zinc finger B-box type profile. 23 62 IPR000315 GO:0008270
Vifa6g00456 224 Pfam PLATZ transcription factor 63 143 IPR006734 -
Vifa6g00456 224 MobiDBLite consensus disorder prediction 192 211 - -
Vifa6g00456 224 MobiDBLite consensus disorder prediction 192 224 - -
Vifa6g00456 224 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 222 - -
Vifa6g00456 224 SUPERFAMILY B-box zinc-binding domain 22 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00456 Vifa-Chr6 179271131 179272604 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vifa6g00456 PLATZ 6.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00456 - - gmx:100787414 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00456 6 179271131 179272604 Vifa6g00456 6 179271131 179272604 ECH