Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00450 ATGTCTCGCCGCGGTGGGGGAAACCATCCCGATAATCGCCGGAATCAACCACCACATTCTCAACAACCTTCCGTCAATGCTGCAGGATCAGGTCGTGGCGGTGGACGCGGCTCGCGCGGTGGACGCACCACCGCTCCTCCTCCGTCGTATGCTTCGGCGCCGGTCACCCCTGCTCCATTTGTTGCTGCGCCGGTCGTACGACCATCTGTTGTAGCGCCGGTTGTTAATCCGTCTGTTACTGCTCCCGTTGCTTCCTCGAGTTCGGCGCAGAATCTCCCGTCGCCGGCGACGGTTTCCACTGAGACGTTGACTAGCGATCTTAAACAGAAAGCTACTCTACAGTCGGCTCCATCGTCTCAGAAGGCGGTTAGGTTTCCTAACCGACCTGATTACGGTCGATTGGGGAGAAAAATTCAAGTTCGTGCTAATCATTTTCAGTTGCAAGTCGCTGATAAGGATATACACCACTATGATGTTTCTATTTCGCCCGAGATTATTTCTAAGAAAGTTTGCAGAGATATTATCAACCTGTTAGTGAAACTCTATCTGGAATCCCAGTTAGACAACCGCATACCTGCTTACGATGGGAGAAAAAGCTTATTTACTGCTGGGGCGTTACCTTTTAACTCCAAGGTTTTTGTGGTTAACTTGAATGATGAAAATAGAGGATCCTCTTCTGAGGCTGATAGGAAAAAGCGTGAGCGGGAGTTTAAGCAGGACTGTCCTTATGAAACCATTCAAGCTCTCGACATTGCTTTGAGGGCAACTCCTTCTGAAAAGTATATTGTTGCTGGGAGATCTTTCTTCTCTCCGAGTTTAGGGCAGCCAGGTCCTCTTGGTGGTGGGATTGAGTATTATAGAGGCTTTTATCAAAGCATTAGGCCAACCCAAATGGGGCTTTCTCTTAACATAGATGTATCTTCAAGAGCTTTTTATGAACCTATTCTTGTCACTGAATTTGTTAAGAAACATTTTAATTTGAATTTTACAAGGCCACTTTCTGATCAAGATCGTGTCAAGATCAAGAAAGCCTTGAGAGGTGTTAAGGTAAAACTATCTCATAGTGGGAAAATAAGGAGTTGCAAGGTAACCAGTATCTCGAGAGAGCCACTCAGAGACCTAACGTTTATGCTCGAAGACAATGCGAGTAGGAAAAAAGTTATTGATTATTTCCATGAGAAATACAATATTGTGTTAAAGCATCCACTTCTTCCCGCTCTCCAAGCTGGACCTGACTCGAGACCTACGTATTTTCCAATGGAGGTTTTCTTCTTTCTTTGTCAAATTGAACCTGGACAGAGATACTCCAAAAGATTGAATGAAGAACAAGTAACTGCTCTTTTAAGGGCTACTTGTCAGCGTCCTGATGAGAGGCGGGAGGATATTAAACATATTGTGAAGCAACACCATTTCAACACTGACAAGGTTGCGGAAGAATTTGGCATAAATGTTAGGGAAGAGCTCGCCCTTGTTGATGCTCGGGTTTTGCCTCCTCCGACGCTAAAATATCATGGAAGTGGAAGTGAATCAAAAATTGACCCTCGAATGGGTCAATGGAATATGATTAATAAGAGGATGGTTGATGCTGGCAAAGTGCAATTTTGGACTTGCGTTTGCTTTTCAAGAATGGACCCAACTCGATTTTGTGCCGAATTGGTTAAAATGTGTCGAAGCAGGGGAATGACTTTCAACCCAGATCCTTTGGTACCAATATTCCCAGGGAATCCAAATCAAATTGAGAGAGAGCTTGTTGAACTTAACAAGAAGTGCAAGGCAACACTTGATGGAACAAAGCAGGAGGGAAGACTGCAATTGTTGATCATAATTTTGCCTGATTTTAAGGGTAAATCATATGATAAAATAAAGCGTGTATGTGAGACTGAATTGGGAATAATTTCCCAATGTTGTCAACCAAAACAAGCGGCAAAAATGAATAAACAATATCTTGAAAATTTGTCGCTAAAGATTAATGTTAAGTCTGGAGGTCGTAATACCGTGTTGAATGATGCATTTGAGAAAAGAATTCCTCTTGTAACTGATATGCCAACAATAATATTTGGTGCTGATGTAACACATCCTCAGCCGGGAGAAGACTCAACTCCTTCTATAGCTGCAGTTGTGGCATCAATGGACTGGCCTTGGGTCACAAGATACAGAGGAATTGTTTCTGCCCAGATTCATCGCGAGGAGATAATTCAAGATCTTTTTAAAACAACAGTGCATCCTCAGAAGGGAGTTCAGCCTGCTGGCATGATAAGGGAGTTAATCTTGGCTTTCCATAAATCAACTGGGCTTAAGCCTGGGAGGATTATATTTTACAGAGACGGAGTTAGTGAAGGCCAGTTCAGTCAGGTTTTGCTTTATGAGATGGATGCAATTAGGAAGGCTTGTAGCTCTATACAGGATGGGTATCTACCTAAAGTTACCTTTGTAGTGGTCCAAAAGAGACATCACACTCGTCTCTTTCCTGTCAACAACAATGAGACAGATAGAAGTGGAAATATTATGCCAGGAACTGTGGTAGACACCAGCATTTGCCACCCTAGGGAATTTGATTTTTATCTCAACAGCCATGCTGGAATTCAAGGGACTAGTCGACCAACGCATTACCATGTGCTGTATGATGAAAATAGATTCAGTGCAGATCAGCTACAAAGTTTTACTAATAACTTATGCTACACTTATGCAAGGTGTACTCGATCTGTCTCAATAGTTCCTCCTGCTTATTATGCACACTTGTTAGCTTTCCGTGCTAGATCCTACTTCAGTGAAGTTGAGAATTCCGATTCTGGTTCTGCAAGTGGTATAAGGAGTACCACCAACTTTGTGGCGACCCTGCCATCTATCTTGGATAACGTCAAAAACGTTATGTTTTACTGTTGA 2883 0.4308 MSRRGGGNHPDNRRNQPPHSQQPSVNAAGSGRGGGRGSRGGRTTAPPPSYASAPVTPAPFVAAPVVRPSVVAPVVNPSVTAPVASSSSAQNLPSPATVSTETLTSDLKQKATLQSAPSSQKAVRFPNRPDYGRLGRKIQVRANHFQLQVADKDIHHYDVSISPEIISKKVCRDIINLLVKLYLESQLDNRIPAYDGRKSLFTAGALPFNSKVFVVNLNDENRGSSSEADRKKREREFKQDCPYETIQALDIALRATPSEKYIVAGRSFFSPSLGQPGPLGGGIEYYRGFYQSIRPTQMGLSLNIDVSSRAFYEPILVTEFVKKHFNLNFTRPLSDQDRVKIKKALRGVKVKLSHSGKIRSCKVTSISREPLRDLTFMLEDNASRKKVIDYFHEKYNIVLKHPLLPALQAGPDSRPTYFPMEVFFFLCQIEPGQRYSKRLNEEQVTALLRATCQRPDERREDIKHIVKQHHFNTDKVAEEFGINVREELALVDARVLPPPTLKYHGSGSESKIDPRMGQWNMINKRMVDAGKVQFWTCVCFSRMDPTRFCAELVKMCRSRGMTFNPDPLVPIFPGNPNQIERELVELNKKCKATLDGTKQEGRLQLLIIILPDFKGKSYDKIKRVCETELGIISQCCQPKQAAKMNKQYLENLSLKINVKSGGRNTVLNDAFEKRIPLVTDMPTIIFGADVTHPQPGEDSTPSIAAVVASMDWPWVTRYRGIVSAQIHREEIIQDLFKTTVHPQKGVQPAGMIRELILAFHKSTGLKPGRIIFYRDGVSEGQFSQVLLYEMDAIRKACSSIQDGYLPKVTFVVVQKRHHTRLFPVNNNETDRSGNIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADQLQSFTNNLCYTYARCTRSVSIVPPAYYAHLLAFRARSYFSEVENSDSGSASGIRSTTNFVATLPSILDNVKNVMFYC 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00450 960 MobiDBLite consensus disorder prediction 81 102 - -
Vifa6g00450 960 Pfam Piwi domain 606 921 IPR003165 GO:0003676
Vifa6g00450 960 ProSiteProfiles PAZ domain profile. 315 431 IPR003100 GO:0005515
Vifa6g00450 960 CDD Piwi_ago-like 475 921 IPR045246 -
Vifa6g00450 960 SMART Piwi_a_2 605 923 IPR003165 GO:0003676
Vifa6g00450 960 SMART DUF1785_2 262 314 IPR014811 -
Vifa6g00450 960 SUPERFAMILY PAZ domain 137 472 IPR036085 GO:0005515
Vifa6g00450 960 FunFam protein argonaute 10-like 674 960 - -
Vifa6g00450 960 Pfam Mid domain of argonaute 514 588 IPR032473 -
Vifa6g00450 960 FunFam Argonaute 10 495 668 - -
Vifa6g00450 960 Gene3D paz domain 309 435 - -
Vifa6g00450 960 ProSiteProfiles Piwi domain profile. 605 923 IPR003165 GO:0003676
Vifa6g00450 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 119 924 - -
Vifa6g00450 960 Pfam PAZ domain 340 447 IPR003100 GO:0005515
Vifa6g00450 960 Gene3D - 675 960 IPR036397 GO:0003676
Vifa6g00450 960 MobiDBLite consensus disorder prediction 1 51 - -
Vifa6g00450 960 Gene3D - 495 669 - -
Vifa6g00450 960 Pfam N-terminal domain of argonaute 136 238 IPR032474 -
Vifa6g00450 960 SUPERFAMILY Ribonuclease H-like 594 924 IPR012337 -
Vifa6g00450 960 Pfam Argonaute linker 2 domain 457 503 IPR032472 -
Vifa6g00450 960 Pfam Argonaute linker 1 domain 265 313 IPR014811 -
Vifa6g00450 960 MobiDBLite consensus disorder prediction 13 28 - -
Vifa6g00450 960 CDD PAZ_argonaute_like 317 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00450 Vifa-Chr6 175467352 175472790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00450 72 960 Eukaryotic Initiation Factors Gene Family AT1G48410 54.894 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00450 K11593 - gmx:100799033 1144.03