Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00449 ATGTCTCGCCGCGGTGGGGGAAACCATCCCGATAATCGCCGGAATCAACCACCACATTCTCAACAACCTTCCGTCAATGCTGCAGGATCAGGTCGTGGCGGTGGACGCGGCTCGCGCGGTGGACGCACCACCGCTCCTCCTCCGTCGTATGCTTCGGCGCCGGTCACCCCTGCTCCATTTGTTGCTGCGCCGGTCGTACGACCATCTGTTGTAGCGCCGGTTGTTAATCCGTCTGTTACTGCTCCCGTTGCTTCCTCGAGTTCGGCGCAGAATCTCCCGTCGCCGGCGACGGTTTCCACTGAGACGTTGACTAGCGATCTTAAACAGAAAGCTACTCTACAGTCGGCTCCATCGTCTCAGAAGGCGGTTAGGTTTCCTAACCGACCTGATTACGGTCGATTGGGGAGAAAAATTCAAGTTCGTGCTAATCATTTTCAGTTGCAAGTCGCTGATAAGGATATACACCACTATGATGTTTCTATTTCGCCCGAGATTATTTCTAAGAAAGTTTGCAGAGATATTATCAACCTGTTAGTGAAACTCTATCTGGAATCCCAGTTAGACAACCGCATACCTGCTTACGATGGGAGAAAAAGCTTATTTACTGCTGGGGCGTTACCTTTTAACTCCAAGGTTTTTGTGGTTAACTTGAATGATGAAAATAGAGGATCCTCTTCTGAGGCTGATAGGAAAAAGCGTGAGCGGGAGTTTAAGCAGGACTGTCCTTATGAAACCATTCAAGCTCTCGACATTGCTTTGAGGGCAACTCCTTCTGAAAAGTATATTGTTGCTGGGAGATCTTTCTTCTCTCCGAGTTTAGGGCAGCCAGGTCCTCTTGGTGGTGGGATTGAGTATTATAGAGGCTTTTATCAAAGCATTAGGCCAACCCAAATGGGGCTTTCTCTTAACATAGATGTATCTTCAAGAGCTTTTTATGAACCTATTCTTGTCACTGAATTTGTTAAGAAACATTTTAATTTGAATTTTACAAGGCCACTTTCTGATCAAGATCGTGTCAAGATCAAGAAAGCCTTGAGAGGTGTTAAGGTAAAACTATCTCATAGTGGGAAAATAAGGAGTTGCAAGGTAACCAGTATCTCGAGAGAGCCACTCAGAGACCTAACGTTTATGCTCGAAGACAATGCGAGTAGGAAAAAAGTTATTGATTATTTCCATGAGAAATACAATATTGTGTTAAAGCATCCACTTCTTCCCGCTCTCCAAGCTGGACCTGACTCGAGACCTACGTATTTTCCAATGGAGCTTTGTCAAATTGAACCTGGACAGAGATACTCCAAAAGATTGAATGAAGAACAAGTAACTGCTCTTTTAAGGGCTACTTGTCAGCGTCCTGATGAGAGGCGGGAGGATATTAAACATATTGTGAAGCAACACCATTTCAACACTGACAAGGTTGCGGAAGAATTTGGCATAAATGTTAGGGAAGAGCTCGCCCTTGTTGATGCTCGGGTTTTGCCTCCTCCGACGCTAAAATATCATGGAAGTGGAAGTGAATCAAAAATTGACCCTCGAATGGGTCAATGGAATATGATTAATAAGAGGATGGTTGATGCTGGCAAAGTGCAATTTTGGACTTGCGTTTGCTTTTCAAGAATGGACCCAACTCGATTTTGTGCCGAATTGGTTAAAATGTGTCGAAGCAGGGGAATGACTTTCAACCCAGATCCTTTGGTACCAATATTCCCAGGGAATCCAAATCAAATTGAGAGAGAGCTTGTTGAACTTAACAAGAAGTGCAAGGCAACACTTGATGGAACAAAGCAGGAGGGAAGACTGCAATTGTTGATCATAATTTTGCCTGATTTTAAGGGTAAATCATATGATAAAATAAAGCGTGTATGTGAGACTGAATTGGGAATAATTTCCCAATGTTGTCAACCAAAACAAGCGGCAAAAATGAATAAACAATATCTTGAAAATTTGTCGCTAAAGATTAATGTTAAGTCTGGAGGTCGTAATACCGTGTTGAATGATGCATTTGAGAAAAGAATTCCTCTTGTAACTGATATGCCAACAATAATATTTGGTGCTGATGTAACACATCCTCAGCCGGGAGAAGACTCAACTCCTTCTATAGCTGCAGTTGTGGCATCAATGGACTGGCCTTGGGTCACAAGATACAGAGGAATTGTTTCTGCCCAGATTCATCGCGAGGAGATAATTCAAGATCTTTTTAAAACAACAGTGCATCCTCAGAAGGGAGTTCAGCCTGCTGGCATGATAAGGGAGTTAATCTTGGCTTTCCATAAATCAACTGGGCTTAAGCCTGGGAGGATTATATTTTACAGAGACGGAGTTAGTGAAGGCCAGTTCAGTCAGGTTTTGCTTTATGAGATGGATGCAATTAGGAAGGCTTGTAGCTCTATACAGGATGGGTATCTACCTAAAGTTACCTTTGTAGTGGTCCAAAAGAGACATCACACTCGTCTCTTTCCTGTCAACAACAATGAGACAGATAGAAGTGGAAATATTATGCCAGGAACTGTGGTAGACACCAGCATTTGCCACCCTAGGGAATTTGATTTTTATCTCAACAGCCATGCTGGAATTCAAGGGACTAGTCGACCAACGCATTACCATGTGCTGTATGATGAAAATAGATTCAGTGCAGATCAGCTACAAAGTTTTACTAATAACTTATGCTACACTTATGCAAGGTGTACTCGATCTGTCTCAATAGTTCCTCCTGCTTATTATGCACACTTGTTAGCTTTCCGTGCTAGATCCTACTTCAGTGAAGTTGAGAATTCCGATTCTGGTTCTGCAAGTGGTATAAGGAGTACCACCAACTTTGTGGCGACCCTGCCATCTATCTTGGATAACGTCAAAAACGTTATGTTTTACTGTTGA 2871 0.4316 MSRRGGGNHPDNRRNQPPHSQQPSVNAAGSGRGGGRGSRGGRTTAPPPSYASAPVTPAPFVAAPVVRPSVVAPVVNPSVTAPVASSSSAQNLPSPATVSTETLTSDLKQKATLQSAPSSQKAVRFPNRPDYGRLGRKIQVRANHFQLQVADKDIHHYDVSISPEIISKKVCRDIINLLVKLYLESQLDNRIPAYDGRKSLFTAGALPFNSKVFVVNLNDENRGSSSEADRKKREREFKQDCPYETIQALDIALRATPSEKYIVAGRSFFSPSLGQPGPLGGGIEYYRGFYQSIRPTQMGLSLNIDVSSRAFYEPILVTEFVKKHFNLNFTRPLSDQDRVKIKKALRGVKVKLSHSGKIRSCKVTSISREPLRDLTFMLEDNASRKKVIDYFHEKYNIVLKHPLLPALQAGPDSRPTYFPMELCQIEPGQRYSKRLNEEQVTALLRATCQRPDERREDIKHIVKQHHFNTDKVAEEFGINVREELALVDARVLPPPTLKYHGSGSESKIDPRMGQWNMINKRMVDAGKVQFWTCVCFSRMDPTRFCAELVKMCRSRGMTFNPDPLVPIFPGNPNQIERELVELNKKCKATLDGTKQEGRLQLLIIILPDFKGKSYDKIKRVCETELGIISQCCQPKQAAKMNKQYLENLSLKINVKSGGRNTVLNDAFEKRIPLVTDMPTIIFGADVTHPQPGEDSTPSIAAVVASMDWPWVTRYRGIVSAQIHREEIIQDLFKTTVHPQKGVQPAGMIRELILAFHKSTGLKPGRIIFYRDGVSEGQFSQVLLYEMDAIRKACSSIQDGYLPKVTFVVVQKRHHTRLFPVNNNETDRSGNIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENRFSADQLQSFTNNLCYTYARCTRSVSIVPPAYYAHLLAFRARSYFSEVENSDSGSASGIRSTTNFVATLPSILDNVKNVMFYC 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00449 956 MobiDBLite consensus disorder prediction 81 102 - -
Vifa6g00449 956 FunFam Argonaute 10 491 664 - -
Vifa6g00449 956 ProSiteProfiles PAZ domain profile. 315 427 IPR003100 GO:0005515
Vifa6g00449 956 CDD Piwi_ago-like 471 917 IPR045246 -
Vifa6g00449 956 Pfam Argonaute linker 1 domain 265 313 IPR014811 -
Vifa6g00449 956 FunFam protein argonaute 10-like 670 956 - -
Vifa6g00449 956 SMART DUF1785_2 262 314 IPR014811 -
Vifa6g00449 956 Pfam PAZ domain 340 443 IPR003100 GO:0005515
Vifa6g00449 956 Gene3D - 491 665 - -
Vifa6g00449 956 Gene3D paz domain 309 431 - -
Vifa6g00449 956 Pfam Piwi domain 602 917 IPR003165 GO:0003676
Vifa6g00449 956 CDD PAZ_argonaute_like 317 425 - -
Vifa6g00449 956 Gene3D - 671 956 IPR036397 GO:0003676
Vifa6g00449 956 SUPERFAMILY Ribonuclease H-like 590 920 IPR012337 -
Vifa6g00449 956 MobiDBLite consensus disorder prediction 1 51 - -
Vifa6g00449 956 SMART Piwi_a_2 601 919 IPR003165 GO:0003676
Vifa6g00449 956 ProSiteProfiles Piwi domain profile. 601 919 IPR003165 GO:0003676
Vifa6g00449 956 MobiDBLite consensus disorder prediction 13 28 - -
Vifa6g00449 956 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 119 920 - -
Vifa6g00449 956 Pfam Mid domain of argonaute 510 584 IPR032473 -
Vifa6g00449 956 SUPERFAMILY PAZ domain 137 468 IPR036085 GO:0005515
Vifa6g00449 956 Pfam N-terminal domain of argonaute 136 238 IPR032474 -
Vifa6g00449 956 Pfam Argonaute linker 2 domain 453 499 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00449 Vifa-Chr6 175467352 175472790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00449 72 956 Eukaryotic Initiation Factors Gene Family AT1G48410 55.021 0.0 1007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00449 K11593 - gmx:100799033 1149.81