Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00447 ATGGAGCGAAAAGGAACCAACAATGATTACAGTTCAGAGGACGAAGGAACTCACCATTACAGGCGTGGAGGCTACCATGCTGTTCGAGTTGGTGATACTTTCAACAATGGCTGCTATGTTGTGCAGGATAAACTCGGCTGGGGGCATTTTTCAACTGTTTGGCTTGCGTGGGATACTCTCAATTCGCGTTATGTGGCCCTTAAAATTCAAAAGAGCGCACAGCACTGCACTGAAGCTGCAACAGATGAAATAAAGATTCTCGAACAAATTAAAGAGGGAGACCCTGATGACAAGAAATGCGCGGTGAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCGTGCATGTGTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACCCTTATCAAATATAGTGACTATCGCGGGGTTCCTCTTTCTATGGTTAAAGAAATATGTTTTCATATTTTGGTGGGCTTGGATTACTTGCACCGTGAGCTTTCTGTCATACACACTGATTTGAAGCCAGAGAATGTGTTGCTTCTTTCACTGATAGATCCGTGTAAGGATCCTAGGAAATCAGGTGCTCCACTAATCCTTCCAAACACCAAGGATAAGGCCGTGTCTAATAATGGCATCATCCAGAACAGTAAAATGGGGAATGCCGATCCGACGAAGAACCAAAAGAAGAAAATGCAGGGAAAGGCTAAGAGGGTGGCTCAAGGTTGTGTTGAGAATGAATGTTCTGATGAAGCCGGGGAATACTATAAAGAACCGGAGCAGGAAAATCGTATTAATGGTGTGAAATCAAGTGTAGAAGAATCTGTTGAAAACAAATCCAATAGTTCTTTTAGTGAAGGCGGATCAACACAGACTTTTGAAAAGGATGTTACACAAGGAAATCATGGTCATAGCAAAAGTAGCCGCTCCGTGAAAAAGAAGCTTCTGGCAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACTTATAAACAGTTCACAAATGATATTCAGACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATATGTGGTCCTTTGCTTGCATTTGCTTTGAGTTTGCCACTGGTGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAACTTCTCGGAAAGATGCCTAGCAAGATTGCACTTGGTGGCCGCTATTCCCGAGATTTTTTCAATAGACACAGTGACCTGAGACACATTCGCGACTTGCGATTCTGGCCACTTAATAAGATTCTGACGGAAAAGTATAATTTCAGTGAACAAGATGCAAAAGACATGGCTGACTTCCTTCTTCCAATACTTCATTTTGACCCTGAACAGAGACCAACAGCTGCTCAGTGCCTTAGTCATCCTTGGCTCAGTGCAGTTCCCCGCACCATTGAGCCTTCACTGACTAGTACACAACCTGATGCAACCAGCGAGGACTTGTTTGAAAAGAGAAAAAAGGAAAAGGGTGAGCAGGAGTTGGTGGAAGTTGGTGTGAGGAATATATCCATTAATCAAACTTCTGAGTCAATCAAAGTCTCTGAACCTGTAATGTCATCAATATAG 1632 0.4277 MERKGTNNDYSSEDEGTHHYRRGGYHAVRVGDTFNNGCYVVQDKLGWGHFSTVWLAWDTLNSRYVALKIQKSAQHCTEAATDEIKILEQIKEGDPDDKKCAVKLLDHFKHSGPNGVHVCMVFEFLGDNLLTLIKYSDYRGVPLSMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSLIDPCKDPRKSGAPLILPNTKDKAVSNNGIIQNSKMGNADPTKNQKKKMQGKAKRVAQGCVENECSDEAGEYYKEPEQENRINGVKSSVEESVENKSNSSFSEGGSTQTFEKDVTQGNHGHSKSSRSVKKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADMWSFACICFEFATGDVLFDPHSGDNYDRDEDHLALMMELLGKMPSKIALGGRYSRDFFNRHSDLRHIRDLRFWPLNKILTEKYNFSEQDAKDMADFLLPILHFDPEQRPTAAQCLSHPWLSAVPRTIEPSLTSTQPDATSEDLFEKRKKEKGEQELVEVGVRNISINQTSESIKVSEPVMSSI 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00447 543 MobiDBLite consensus disorder prediction 268 305 - -
Vifa6g00447 543 FunFam CMGC/SRPK protein kinase 25 124 - -
Vifa6g00447 543 Gene3D Phosphorylase Kinase; domain 1 15 121 - -
Vifa6g00447 543 SMART serkin_6 39 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00447 543 CDD STKc_SRPK 28 480 - -
Vifa6g00447 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Vifa6g00447 543 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
Vifa6g00447 543 MobiDBLite consensus disorder prediction 268 295 - -
Vifa6g00447 543 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00447 543 Pfam Protein kinase domain 316 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00447 543 FunFam Serine/threonine-protein kinase SRPK-like protein 310 480 - -
Vifa6g00447 543 MobiDBLite consensus disorder prediction 490 509 - -
Vifa6g00447 543 SUPERFAMILY Protein kinase-like (PK-like) 34 495 IPR011009 -
Vifa6g00447 543 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 9 501 - -
Vifa6g00447 543 ProSiteProfiles Protein kinase domain profile. 39 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00447 543 Gene3D Transferase(Phosphotransferase) domain 1 122 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00447 Vifa-Chr6 174753726 174757336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00447 8 542 EF-hand Containing Proteins AT5G22840 65.804 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vifa6g00447 Pkinase 5.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00447 K08832 - gmx:100790060 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02483 1 395432238 395435841 Vifa6g00447 6 174753726 174757336 PCT