Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00438 ATGGAGCAGTCTGTTCCGAGATCGAGGGGCCGTCCGAGGAAACGGAGAAAGGAGGACGAGAAGGAAGGAAAATCTGTTCCGGCCGCTAAGAGGCAAGCAGTGGAAACAAAACCAATAGTATTGGTTGGTAAATATGTTTTGAAAAAGTTCCCTAGAAATGGTGTTTTTCTAGGGAAAGTTGTATACTACGAATGTGGTTTCTATCGAGTCATCTATGAAGATGGTGACTTCGAGGATCTAGAGAGTGGAGAAATCCGTCCCATTCTTATGAGTGATGCTGTAAATTTTGACGCCAGTCTGACAAAGAGGAGGACCAAATTGGAGAAATTTGTTTCACAGAATAGGGCTAAGGCTGCAGATGTGGCTGATACGGGTTCACCGAAATCCGTGAAGGAGGAATCTGCTGTTGATGTTACTGGTCCTAGTGAATTGGATGGTGGGTTATCAGTTGAAAATGATAAGGATGAGGATGCGGATGATGGAGCTGAGGATGATTTGTCAAGTGTCTCTGTTTCTGATGCCGAGACAGCGCCTTTGCCACCACCGTTGCTGTTGCCACTGTCATCTGGATCTATTGGTGTGCCGGAGCTGAGTGTCTCCCATCTTTTTTCGGTCTATGGATTTTTAAGATCATTCAGCACACAATTGTTTCTTCATCCCTTTACTTTGGATGATTTTGTTGGTTCTCTTAACTGTAAATTCTCTAACAATTTGTTTGATGCTATTCACATTTCTTTGATGCGGGTGTTGAGGCGTCATCTTGAAACCCTGTCACCCGAGGGATCTGAGCTTGCATCGCAATGCCTGAGGTGCTATGATTGGAACTTGCTTGATACATTGACTTGGCCTGTTTTTGTGGTTCTGTATTTATTGATTAATGGGTTCACGAAAGGACCTGAATGGAAAGGGTTTTACGACGAGGTTTTTAGTGGCGAGTATTATATGTTGCCTGTAAGTAGGAAATTAGTGATACTGCAAATTCTTTGTGACGACGTTTTGGAATCTGATGAGCTTAAAACTGAAATGAGCATGCGAAAGGAGTCGGAAGTTGGGATGGATTATGATGCAGAAGATACCATTCCTGCAGAAACAGGCCCCAGAAAGGTCCATCCAAGATATGCCAGGACCTCTTTTTGTGAGGATAAAGAAGCTACAAAATTGGTTTCAGCGTCAATTGCTGTAAACCAACCTGGTTTATATTGCAGAGATACAGAAAACACTGCGGATGGGGATGCTGATAGAAATGGAGACGATTGTCGCCTCTGTGGTATGGACGGAACCCTTCTTTGCTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTAATGAAAATGTTTATACCAGAAGGACCATGGTATTGTCCAGAGTGCAAAATCAACATGGCTGGGCCCACAATTGCAAAGGGAACCTCACTTAGAGGGGCTGTAATATTTGGAAGGGATTTGTATGGGCAGCTCTTCATGGGCACATGCGACCACTTACTTGTGCTTAACATTGACAACAATGAAGTTTGTCTTAGATATTACAATCAGAAAGACATCCCTAAAGTCGTCCAAGTGCTTTATGAATCCATGCTGCACAGGCCAATGTACTATGATATTTGCATGGCTGTGTTACAATATTGGAATGTGGCAGAAAAGTTCTTACCTCTCCCTGCTTCAACTGAAACAAATATAAAGGATGAGGCACAATATCCTGCTTCAACTGAAACAAATATAAAGGATGAGACACAATTTCCTGCTCCTTTACTTCCTCCTCCAAACGAAGACAACCATAAGCCTGTTAGTTTGGTCCAGGGAGAGAACTCTCCAACCACTGCAAGTTTGATTCGCAATACTAATATGGTGTCTTCTCTTGATGCTTTAGAAGTTATCACTCAAAGTCCTGCTCTTGATAGCAATGGCATTGCTAGAAGTGAAGAGGGCCTTACTATGAATAAGAACCTTGGTGAGGAAACTAGAATGGAGGCAATAATTTCAGCTGGTTCTGTTAGTCATCAGTCCAACCTGAACTTTCAGAATTCTGTCAATATGTTCACTGCTGTAGATGCCACTAAGCGCTCTTTGATAAACAGTCAATTAAGTAATTGTGTCCATGCAAATGATATGGGGTTGCCTTTGAATTTTTCTTCGCAAAACAAAGAAAATGCAAATGATGATTTTTGTTACATGGGTTTCTTCTTTAAACCCATGTCATACATAAATTACTATATGCATGGTGATTTTTCTGCGTCAGCAGCTTCCAAGTTTGCCATCGTTTCTTCAGAGGAATCTAGGTCAGAGGGTCTTGCGCCAGACAGCCAGAAGAAAACTGCAGCAGCATATACTTATATGCAAGCAAAAGCGTTCTCACTAGCAGCTTCACGTTTCTTTTGGCCTAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGTTGGTGCATTTCCTGTAAAGCCCCTGTTGCTAGCAAGAGAGGGTGCATGTTAAATCATGCTCTTATAAGTGCGACAAAAAGTGCTGTGAAAATCCTTGCTACTTTTTCTCCTATAAGGAGTGGAGAGGGAATTCTTCCTAGCACCATTGCGACCTACCTTTTATATATGGAGAATTGTTTACATGGTCTAGTCATTGGCCCCTTCACAAATGCAAGCTTTCGAAAGAATTGGCGTAAGCAAATGGAACATGCCACAACATTTACTGCTATCAAGTCACTTCTACTCAAACTTGAGGAGAACATTCGAATCGTTGCTTTTTGTGGCGACTGGGTTAAGCTGATGGATGATTGGTCGGTCGAATTTCCCATTATACAAAGTGCCACATCTACTCTTGGAACAATTCAGAAACGTGCACCAAGTGGGAAGCGTTGTAAAAAGAAGTCATCTATTGATGAAGCTATAGTTAATGTTTCTAAGGAAGGTATGTGGTGGCGTGGTGGGAAAGTTACCAAGTATATTTTTCAGAGTGCTGCTTTGCCGAAATCCATGGTCAGAAAAGCAGCCCGCCAAGGTGGTTCTAGGAAAATTTCTGGTATTGTATATACTGATGGCTCTGAAATTCCCAAAAGAAGTAGACAGCTTGTTTGGAGAGCCGCAGTTCAAATAAGTAGGAATGCCTCACAGCTGGCACTCCAGGTCAGATGTCTAGATTCTTATCTTAGATGGAGTGATCTGATTCGTCCAGAGCAGAACATACAGGAAGGGAAAGGTCAAGAGACTGAAGCTTCTGCTTTCCGAAATGCAAATATTTGTGACAAAAAACTTGTAGAGGGAAAAGTTTGTTATGGAATAGCTTTTGTGAGCCAAAAGCATCTTTCTAACCGGGTGATGAAAAGCGTTGTTGAAAAAGAGCAATGTCCATTGGGAAAAGAAAAGTATTGGTTTTCTGAAACTCGCATTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGTAATGAAAAGGTTCTATGTGAAGAGCAGTATAGTAGTGCATCTCAGTTGCACAGAAGGCGGTTGAAAGGTACCTGCAAAGGCTGCAATGACATATTCTTTTATCTCGTTTGCAAGAGAGACAACTTGGCATTCTCGTGCTCTTCATGTCGGATGGGCATTTCAATTCGGAATGCTCACAAGTGTAATGCATGTCAAGGATATTGTCACGAGGACTGTTCAATAAGCTCAGTCTTGAGACTCTCTACAAATGGGAGAGTTGAGTGCTTGACCACATGCAAACGATGTCACCATGCAAAGTTACTTGCTCCAAATGTAACTAGCAATGAATCTCCAACCAGTCCCTTAATCTTACAGAGACAGGAGACCAGCACTGGGACTGGGATTATTTTTAAGGGACCAAGGCCAAAGGCCGGTCATTCTGATGTGAAACAAGTCAATTCCATGTCAGGTTTGAAAGGATCTAAGCGTAAATCTCAAGATCAAACTTCGACTTCTACCAAGAAAAAGAATAGTCATCCTGACTCAAAACAAGCCGTTTCTGATTCTACTTTGGCATCAAGCAACCGTCGCAACAATAATTGTTCTTGGGGTATAATATGGAAAAAGAGAAGTAATGAAGATACAAACATTGATTTTAGGACAAAAAACATATTATTAAAGGGAGGATCAGACATACCTGATTTGTATCCTGTTTGTCACTTATGCAAAAATGACTATAGGTCAGATCTAATGTATGTTTGCTGCGAGACATGCCAAAATTGGTATCACGCTGAAGCTGTTGAACTCGAAGAATCCAAAATTTCGGATGTGTTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAATCACCTGTCTGTCCTTACGATGCAAAACCAAAATCAGAAGTTAAGAAATCACGCAGAAAGGCTTCAAAGAAACAACATTCTGGACCTGATTCTGATTCTGGAGCATTTAATGATATGAGAGAGTCTGAGCCTGCTACTCCTGTGTTTCCTGTGGAGAATGATCCTTTACTTTTCTCTCTTGCAAAGGTTGAGCTGATTACAGAACCTAATCAGTTAGATTCGGATGTTGAGTGGAACACTCTCTCTATGCCAGGGCCTCAGAAATTACCCGTGAGAAGGCATGTTAAGCATGAGGGAGGTGGTGATGGTTCTGTTTCAGAAATACCTTTTCATGATGAATTTTCAACATATAGTGAAGCAGGCAATCTGTCCAATCCTGCAGATTCGATATTACCTTTAGAATACGACTCTGCTGTTTTTGACAGCAATCTGCTGAGCAACTCTGAATTTGTAAATAATGATGACAACATGTTCAACGATAATACTATCTTCGACGTAAATGACCTGCTGCGCTCAGATGATAGCCAGATTGGTGAAGGTGATGTGACTGGGGAATTATTGGGCTACAACATGGACCAGAATAATGAAGGTGATGTGCCTGGGGAATTTTTGGGATACAACATGGAGAATTCTGCATCCGACCCTTTACATTGGACGTGTCAAACTTGTCGGGATTGGCAATAA 4956 0.4173 MEQSVPRSRGRPRKRRKEDEKEGKSVPAAKRQAVETKPIVLVGKYVLKKFPRNGVFLGKVVYYECGFYRVIYEDGDFEDLESGEIRPILMSDAVNFDASLTKRRTKLEKFVSQNRAKAADVADTGSPKSVKEESAVDVTGPSELDGGLSVENDKDEDADDGAEDDLSSVSVSDAETAPLPPPLLLPLSSGSIGVPELSVSHLFSVYGFLRSFSTQLFLHPFTLDDFVGSLNCKFSNNLFDAIHISLMRVLRRHLETLSPEGSELASQCLRCYDWNLLDTLTWPVFVVLYLLINGFTKGPEWKGFYDEVFSGEYYMLPVSRKLVILQILCDDVLESDELKTEMSMRKESEVGMDYDAEDTIPAETGPRKVHPRYARTSFCEDKEATKLVSASIAVNQPGLYCRDTENTADGDADRNGDDCRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMAGPTIAKGTSLRGAVIFGRDLYGQLFMGTCDHLLVLNIDNNEVCLRYYNQKDIPKVVQVLYESMLHRPMYYDICMAVLQYWNVAEKFLPLPASTETNIKDEAQYPASTETNIKDETQFPAPLLPPPNEDNHKPVSLVQGENSPTTASLIRNTNMVSSLDALEVITQSPALDSNGIARSEEGLTMNKNLGEETRMEAIISAGSVSHQSNLNFQNSVNMFTAVDATKRSLINSQLSNCVHANDMGLPLNFSSQNKENANDDFCYMGFFFKPMSYINYYMHGDFSASAASKFAIVSSEESRSEGLAPDSQKKTAAAYTYMQAKAFSLAASRFFWPSSEKKLVEVPRERCGWCISCKAPVASKRGCMLNHALISATKSAVKILATFSPIRSGEGILPSTIATYLLYMENCLHGLVIGPFTNASFRKNWRKQMEHATTFTAIKSLLLKLEENIRIVAFCGDWVKLMDDWSVEFPIIQSATSTLGTIQKRAPSGKRCKKKSSIDEAIVNVSKEGMWWRGGKVTKYIFQSAALPKSMVRKAARQGGSRKISGIVYTDGSEIPKRSRQLVWRAAVQISRNASQLALQVRCLDSYLRWSDLIRPEQNIQEGKGQETEASAFRNANICDKKLVEGKVCYGIAFVSQKHLSNRVMKSVVEKEQCPLGKEKYWFSETRIPLYLVKEYEEGNEKVLCEEQYSSASQLHRRRLKGTCKGCNDIFFYLVCKRDNLAFSCSSCRMGISIRNAHKCNACQGYCHEDCSISSVLRLSTNGRVECLTTCKRCHHAKLLAPNVTSNESPTSPLILQRQETSTGTGIIFKGPRPKAGHSDVKQVNSMSGLKGSKRKSQDQTSTSTKKKNSHPDSKQAVSDSTLASSNRRNNNCSWGIIWKKRSNEDTNIDFRTKNILLKGGSDIPDLYPVCHLCKNDYRSDLMYVCCETCQNWYHAEAVELEESKISDVLGFKCCKCRRIKSPVCPYDAKPKSEVKKSRRKASKKQHSGPDSDSGAFNDMRESEPATPVFPVENDPLLFSLAKVELITEPNQLDSDVEWNTLSMPGPQKLPVRRHVKHEGGGDGSVSEIPFHDEFSTYSEAGNLSNPADSILPLEYDSAVFDSNLLSNSEFVNNDDNMFNDNTIFDVNDLLRSDDSQIGEGDVTGELLGYNMDQNNEGDVPGEFLGYNMENSASDPLHWTCQTCRDWQ 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00438 1651 Gene3D Cupin 1370 1492 - -
Vifa6g00438 1651 ProSiteProfiles Zinc finger PHD-type profile. 416 463 IPR019787 -
Vifa6g00438 1651 CDD PHD2_CHD_II 419 460 - -
Vifa6g00438 1651 CDD Tudor_AtPTM-like 42 90 IPR047365 -
Vifa6g00438 1651 SUPERFAMILY FYVE/PHD zinc finger 405 466 IPR011011 -
Vifa6g00438 1651 MobiDBLite consensus disorder prediction 150 166 - -
Vifa6g00438 1651 MobiDBLite consensus disorder prediction 1268 1331 - -
Vifa6g00438 1651 SMART PHD_3 418 461 IPR001965 -
Vifa6g00438 1651 SMART PHD_3 1373 1421 IPR001965 -
Vifa6g00438 1651 SUPERFAMILY FYVE/PHD zinc finger 1366 1427 IPR011011 -
Vifa6g00438 1651 PANTHER PHD FINGER FAMILY PROTEIN 36 1443 - -
Vifa6g00438 1651 MobiDBLite consensus disorder prediction 1 29 - -
Vifa6g00438 1651 Pfam DDT domain 198 253 IPR018501 -
Vifa6g00438 1651 MobiDBLite consensus disorder prediction 1303 1317 - -
Vifa6g00438 1651 Pfam PHD-finger 419 461 IPR019787 -
Vifa6g00438 1651 MobiDBLite consensus disorder prediction 121 175 - -
Vifa6g00438 1651 ProSitePatterns Zinc finger PHD-type signature. 419 460 IPR019786 -
Vifa6g00438 1651 ProSiteProfiles DDT domain profile. 196 256 IPR018501 -
Vifa6g00438 1651 MobiDBLite consensus disorder prediction 13 28 - -
Vifa6g00438 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 465 IPR013083 -
Vifa6g00438 1651 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 301 342 IPR028942 -
Vifa6g00438 1651 SMART testlast3 196 256 IPR018501 -
Vifa6g00438 1651 MobiDBLite consensus disorder prediction 1284 1302 - -
Vifa6g00438 1651 MobiDBLite consensus disorder prediction 1431 1471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00438 Vifa-Chr6 172836211 172844558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00438 289 562 EF-hand Containing Proteins AT5G22760 48.936 1.67e-76 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vifa6g00438 DDT 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00438 - - tpra:123920021 2430.21