Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00436 ATGGCTGATCAAAACTTAAACCTACCCGTCACAGAAACCATCATCAATCGTAACAACACTGTCGTAACAGAAGTTATTGAGATTGATGCTGGTTCAGACACCGGAGAAAAATCCGAACCTAAAAATACAGGTTCGGACCCTCGGGTGAAAAGGCCGAGAGGTAGGCCTAGAAAGTACGAGATTGATGTGTCTGTGTCAGAGTCAGGGTCAGGATCACGTGAGTTTGTTAATCAACCTTTTGGAAGTGAAGTGAAACGTGGAAGAGGACGTCCTCGTGGTTCTGGAAAACTTCAGATTTTGGCCTCTATTGGGGGATGTGTTGCTGAAAGTGCGGGAGGAAGTATGACACCTCATGTGCTGACTGTGAACCCTGGAGAGGATGTGGTTGGAAAAATATTTACGTTTTTTCATAAAGGTTCTAGAGGAGCTGTTTGCATTCTTTCTGCTGCTGGTTCTGTATCTACTGTCATCCTTCGTCAACCTGGTGTTTCGGGTGGTTCTTTAAAATACGAGGGTCACTTTCAGATTTTATCTTTAAGTGGATCATGCACCTTCACTAGTGGTGCTGCTGGTGGTGCAGAGAGGAAAAGTGGCATGTTGAGTGTTTCATTGGCTAAACCTGATGGAGGGGTTTTTGGAGGTGGTGTTGAGAGCTCTTTGATAGCTGCTTCTCCTATTCAACTTATTTTGGCAACATTCAAGCAAAATATAAGCAACCAAATCAAGAGAAAGTACTCATCTCCAACTTCAACAGCTCCAAACATGGTGACTAATCAAGATTCCTCAAGTGATGACATTTTGAAAGTTCCGAGGTTAACCCTAGAAGGAGAACCCAGCTGTCTAAGAGCAACAGCAACAAAGAAAACCAATGGTGTAGCAGGAGCGGATGATAAAGTGAAAGTTGAAACAACAACTAATGCTCAATCTGATTCTGTTGGTGATGGAGTTATTGACCTTGACAGCCAGACAACACTGGAGCCTGTTAATGCCAACAGCGTACCTTAA 1005 0.4358 MADQNLNLPVTETIINRNNTVVTEVIEIDAGSDTGEKSEPKNTGSDPRVKRPRGRPRKYEIDVSVSESGSGSREFVNQPFGSEVKRGRGRPRGSGKLQILASIGGCVAESAGGSMTPHVLTVNPGEDVVGKIFTFFHKGSRGAVCILSAAGSVSTVILRQPGVSGGSLKYEGHFQILSLSGSCTFTSGAAGGAERKSGMLSVSLAKPDGGVFGGGVESSLIAASPIQLILATFKQNISNQIKRKYSSPTSTAPNMVTNQDSSSDDILKVPRLTLEGEPSCLRATATKKTNGVAGADDKVKVETTTNAQSDSVGDGVIDLDSQTTLEPVNANSVP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00436 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 286 IPR039605 GO:0003680
Vifa6g00436 334 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Vifa6g00436 334 SMART AT_hook_2 50 62 IPR017956 GO:0003677
Vifa6g00436 334 MobiDBLite consensus disorder prediction 29 93 - -
Vifa6g00436 334 CDD DUF296 116 233 IPR005175 -
Vifa6g00436 334 MobiDBLite consensus disorder prediction 291 334 - -
Vifa6g00436 334 MobiDBLite consensus disorder prediction 301 334 - -
Vifa6g00436 334 MobiDBLite consensus disorder prediction 30 62 - -
Vifa6g00436 334 Gene3D - 117 256 - -
Vifa6g00436 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 234 IPR005175 -
Vifa6g00436 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 113 237 - -
Vifa6g00436 334 ProSiteProfiles PPC domain profile profile. 112 259 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00436 Vifa-Chr6 172343350 172345810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00436 49 233 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 49.730 2.03e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00436 - - mtr:25492323 388.652