Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00432 ATGGACTCATCAATGGAGTTTTGGGGCGTTGAGGTTAAAGTTGGAGAAACTGTGAAAGTTGATCCAAACGAGGACCTTGAGGGATACATCCATATTTCTCAGGTTGCACTTGGAGAGGTTAAGAAAGGGAAAGCTATTGAACCTGTTGTTCTGTATGTGAAAGTTGAGGATCAGAAGATTGTTCTGGGAACTCTTGTTAAGGATGAGATTCCTCAGATTTCTATGGATATAGTTCTGGACCAGCAGTCTGAACTTTCTCATAATTCCAAGAATGCTTCTGTTTATTTTTGTGGATACAAAGCTTTTAGCCCTGAAGATGAATCTGATAGCTCTGACTTTTCTGATAGTGATGAAGAACTTGTTCCTTTGAAGGAGGATGCTCAAGCAGTAAAGGAGGCTGCTAAATCTGGAAAACCTGCAGCTGATGCATTGACAAAGCAAGTCAAGGTTACTGATCCAACTAATGGTAAGGCTGTTGATCCAGAGAAAAATGAAGACGACTCGGATGAATCAGATTCAGATTATTCTGAGGATGAAATTTCTGATGATGAGATCGATACTGATGCTCTTACTGGTAGTAGTGATGAAGAGACTCCTGCTAAGAAGGTTGATAGTGATGAGAGTGAGAGTGAGCAAGATGCTACTCCTAAAACTATTGATTCTGACAGTGATGCTGATAGTGATTCTGAGAGTGAAGAAGAGACTCCTGCTAAGAAGGTGGTGACTCAGGGAAAGAACAACAAGAGAGGAATTGGTTCTAGTTCACAAACTCCAGTTTCTGCCAAGAAAGCTAAGATTGGTACTCCTGAAAAGACCGATGGTAAAAAAGGTGTACATATAGCAACTCCCCACCCTACAAAGCAGGGTGGAAAATTTAATCAGAATGCTGCAAAGGGCCAGACTTCCAACTCTAGCAAGTCTGGTGGCTCCAAATCTGGTCAACAAAATAAGAAGTCTAAGCAAGGACGTCGGTGA 975 0.4154 MDSSMEFWGVEVKVGETVKVDPNEDLEGYIHISQVALGEVKKGKAIEPVVLYVKVEDQKIVLGTLVKDEIPQISMDIVLDQQSELSHNSKNASVYFCGYKAFSPEDESDSSDFSDSDEELVPLKEDAQAVKEAAKSGKPAADALTKQVKVTDPTNGKAVDPEKNEDDSDESDSDYSEDEISDDEIDTDALTGSSDEETPAKKVDSDESESEQDATPKTIDSDSDADSDSESEEETPAKKVVTQGKNNKRGIGSSSQTPVSAKKAKIGTPEKTDGKKGVHIATPHPTKQGGKFNQNAAKGQTSNSSKSGGSKSGQQNKKSKQGRR 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00432 324 MobiDBLite consensus disorder prediction 287 316 - -
Vifa6g00432 324 FunFam Histone deacetylase HDT1 5 105 - -
Vifa6g00432 324 MobiDBLite consensus disorder prediction 125 324 - -
Vifa6g00432 324 MobiDBLite consensus disorder prediction 195 224 - -
Vifa6g00432 324 MobiDBLite consensus disorder prediction 266 280 - -
Vifa6g00432 324 Pfam Nucleoplasmin-like domain 7 99 IPR041232 -
Vifa6g00432 324 Gene3D Nucleoplasmin core domain 2 104 - -
Vifa6g00432 324 MobiDBLite consensus disorder prediction 240 262 - -
Vifa6g00432 324 MobiDBLite consensus disorder prediction 165 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00432 Vifa-Chr6 169919039 169922897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00432 5 100 C2H2 Transcription Factor Family AT3G44750 53.125 2.74e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00432 - - psat:127103750 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02390 1 384895188 384895866 Vifa6g00432 6 169919039 169922897 PCT