Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00421 ATGGGAAATCATAATACACCCTTTTCCCTTTCCCTTGATACCAAGGATGTTGTTATAGTAAAACCCTCCAAACCCACACCTTCTCAAATTCTTTCACTCTCCACCATTGACAATGATCCTAACATCAACATTCTTTGTCAAACCATATATGTCTACAAACCAAATCTCAACTCCCCAAATGACCAAAAAGACCCTGCTTCTCTAATAAAAGAAGCACTCTCAAAAGCTTTGGTTTACTATTACCCTCTTGCAGGAAAAATAACAACACTTGATGATGATGATGATGAAAAGCTTGGAATCAACTGCAATGGTGATGGAGTTCCATTCTTAGAAGCCAATGCAAACTGTGAACTCTCTTCCCTTAACTATCTTGAAGGCGTTGATGTTCCAACAGCACAAAATTTAGTGTTTGATAACCCTTCACAAGACCAAACTAGTCCTTATCCTTTGGTTTTCAAAGTTACAAAGTTTCTTTGTGGTGGTTTCACTATTGGTATGGGATTGTCACATAGTGTTTGTGATGGTTTTGGTGCATCAAAATTCTATAGAGCACTTTTAGAATTTGCAAGTGGGAAAAATGAACCTTCTGTGAAACCTGTTTGGGAGAGAGAGAGACTAACACTGAAAAAAACTAGTCTTAAGGAAGAAGAAAAAGAACCATTCAAGTTTCTTGTAGATGAAACTTCATTAGCAACTTCACCTTTTTTACCAACCAAAGAAATTTCACATGAATGTTTTAACTTGAATAGTGAAACCATAAAAAGACTCAAAATGAAACTAATGAAGGAAATTGATAGTGATGAATATCATAACATGATGAAGGAAAGTTTCACAATCACAACACTTGAAGCACTTGGTGCATATGTTTGGAGGTCAAAGGCAAGAGCTTTGAAACTAAACAATGATGGAGAAACATTGTTTTGTTTAGCAGTAGGTGTGAGACACTTAATGGATCCACCTTTGAATGAAGGGTATTATGGTAATGCATTTGTAGCTTCAAATGTGGTGTTAAAAGTGAAAGAGCTTAATGAAAACCCACTTTTTGAAGCTGTGAAGCTTATCAAAGAGAGTAAAAAAGTTTCAATGAATGAAGAACATATAAGAAACTCAATTAACATGTTGGAGATGATGAGGAGAAGGAAGATTAAGATTGAAGGAAGAGGTGCATCATTGGTTTTGACAGATTGGAGACAACTAGGTTTGTTGCAAGAAGTTGATTTTGGATGGAAGGGTTCAGTTAATATTGTGCCTGTTCCTTGGAACATGTTTGGCTTTGTGGATTTATGTCTCTTTTTGCCTCCAAATAATTTGGATCCTTTGATGAAAGGTGGAGTTAGAATCTTTGTGTCACTTCCAAAATCTTCAATGGCTAAGTTTAAGGAGGAGATGGAGCTTCTCAAGGGCATGAAAGTTGATGAAGATATATAG 1428 0.3606 MGNHNTPFSLSLDTKDVVIVKPSKPTPSQILSLSTIDNDPNINILCQTIYVYKPNLNSPNDQKDPASLIKEALSKALVYYYPLAGKITTLDDDDDEKLGINCNGDGVPFLEANANCELSSLNYLEGVDVPTAQNLVFDNPSQDQTSPYPLVFKVTKFLCGGFTIGMGLSHSVCDGFGASKFYRALLEFASGKNEPSVKPVWERERLTLKKTSLKEEEKEPFKFLVDETSLATSPFLPTKEISHECFNLNSETIKRLKMKLMKEIDSDEYHNMMKESFTITTLEALGAYVWRSKARALKLNNDGETLFCLAVGVRHLMDPPLNEGYYGNAFVASNVVLKVKELNENPLFEAVKLIKESKKVSMNEEHIRNSINMLEMMRRRKIKIEGRGASLVLTDWRQLGLLQEVDFGWKGSVNIVPVPWNMFGFVDLCLFLPPNNLDPLMKGGVRIFVSLPKSSMAKFKEEMELLKGMKVDEDI 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00421 475 PANTHER ACYL TRANSFERASE 4 12 464 - -
Vifa6g00421 475 Pfam Transferase family 12 465 - -
Vifa6g00421 475 Gene3D - 9 221 IPR023213 -
Vifa6g00421 475 Gene3D - 236 463 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00421 Vifa-Chr6 166519839 166521266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00421 10 461 Monolignol Biosynthesis Gene Families AT5G48930 27.021 7.69e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00421 K20240 - gmx:100801843 672.93