Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00405 ATGAATTTAACTAATTCAATGGTAGATATCCCACCTGGTTTTCGTTTCTTCCCAACTGAAGAAGAGCTTGTTAGTTTTTACCTAAAGAAGAAGCTTCAAGGAGAAAGAAATTCTTTTGATAGGGTTATTCCTGTCATTGACATCAATGGTGTAGAACCATGGAACCTCCCAACTCTTGCGGGGGAGCTATGCCGCGAAGATAAAGAGCAATGGTTTTTCTTTTCGCCGGGGCAAGAGAGAGAAGCAAGAGGAGGGAGACCTAATAGAACAACTGGTTGTGGTTATTGGAAGGCAACAGGTTCTCCAGGTTATGTTTATTCTTCTGATAATAAAGTGATTGGGGTGAAGAAAACAATGGTGTTCTACAAAGGAAAAGCTCCTACTGGAAGGAAAACTAAATGGAAGATGAATGAATACAGAGCCATTCATGTGTGTAACCAATCCAATACTGCCACACCTCAGTTAAGACGGGAATTCAGTGTGTGTCGAGTATATGTGATATCAGGCGGTGTTAGAGCATTTGACAGACGTCCATTAGAGAACGAAAGGTCTGATCAATTTCGGGTTAACAAGATGGATCAAAATCCATTTTTTGCTGCTGCCACTTGTACAAATCAAAATGCAAGAATGGATCATGCATCAAGTTCATTTGAAATTTCTCAATTAGGGGGATTCCAAAGTGTATATGCTCCAGAGGTTGTAGGAGGTTCAAGTAGCAATAATTGGAATGTAAATAACAATGGTGATAATGGTGATGGTGTTCAAATCCAAGAACCACTATGGGAATGGGAATGGGAACATTTTAATTGGACTTGA 816 0.3983 MNLTNSMVDIPPGFRFFPTEEELVSFYLKKKLQGERNSFDRVIPVIDINGVEPWNLPTLAGELCREDKEQWFFFSPGQEREARGGRPNRTTGCGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPTGRKTKWKMNEYRAIHVCNQSNTATPQLRREFSVCRVYVISGGVRAFDRRPLENERSDQFRVNKMDQNPFFAAATCTNQNARMDHASSSFEISQLGGFQSVYAPEVVGGSSSNNWNVNNNGDNGDGVQIQEPLWEWEWEHFNWT 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00405 271 Gene3D NAC domain 19 169 IPR036093 GO:0003677|GO:0006355
Vifa6g00405 271 ProSiteProfiles NAC domain profile. 10 167 IPR003441 GO:0003677|GO:0006355
Vifa6g00405 271 Pfam No apical meristem (NAM) protein 11 140 IPR003441 GO:0003677|GO:0006355
Vifa6g00405 271 SUPERFAMILY NAC domain 5 165 IPR036093 GO:0003677|GO:0006355
Vifa6g00405 271 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00405 Vifa-Chr6 159541117 159542401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00405 9 264 NAC Transcription Factor Family AT5G22380 52.140 8.35e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa6g00405 NAM 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00405 - - cam:101497878 379.022