Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00391 ATGCCAGTGGAAAAGCCAAGTTCTTCAAGAGTTATTGGTAAGCAATCTGAGCCTGAAAAGCCAGTTGAATCTGATGAGAAGGTCAACCTTGAAGAAGAACCTGAGGAAGAAATGGAAGAAGAGATTGAATATGAAGAAGTAGAAGAAGAGGAGGAAGTGGAAGAAATAGAAGAGGAGGTGGAAGAAGAAGAGGAGGACCCAGAGGAGGTAGAGGTAGAGGTAGAGGTAGAGGAAGAGGAAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGTGGAAGAAGACACGAACATTGATGATGATGAGAAGAAGAAACATGCTGAACTTCTTTCTCTTCCTCCTCACAAGTCTGAAGTTTACATAGGTGGCATTCCTCTTGATGCCTTAATGGAAGATTTGAAAGATTTTTGTGAGCGTATTGGGGAAGTTGTACAGGTTCGAATAATGAAAGGAAAAGATTCTTCGGAGAATAAGGGTTTTGCTTTTGTGCTTTTTAAAAATGAAGAACTGGCTTCTAAAGCCATTGAGGATCTGAATAATACTGAATTTAAGGGTAAAAAAATAAGATGTTCTACATCTCAAGCAAAAAATCGTCTTTTTATTGGCAATATTCCTAGAAGCTGGGGCGATAAAGATCTAAAGAAGGTTGTGAGTGAGATTGGACCTGGTGTTACCGCTGTTGAACTAGTCAAGGATATGAAGAACATAATCAATAACCGCGGTTTTGCTTTTATTGACTATTATAATAATGCATGTGCTGAATATTCGAGACAAAAGATGATGAACCCAACATTTAAGCTTGGTGACAACTCCCCAACAGTGAGCTGGGCTGACCCTAAAAATTCTGATTCCTCTGCCTCATCTCAGGTGAAGGCAGTATATGTGAAGAATCTTCCTAACAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCACCAAAATCTGGTCAGGAAAAGAACAGAATCGGCTTTGTTCATTTTGCAGAGCGATCAAATGCTATGAAAGCACTAAAGAATACTGAAAGATATGAATTAGAAGGTCGAATGTTAGAGTGTTCTCTAGCAAAACCACAGGCTGATCAGAAGGCTGTAGTATCAAATATACAGAATCAAGGATTGCTTCCAAGTTATCCGCCACATCTTGGTTATGGTTTGATTGGTAATCCCTATGGTGCACTTGGTGCTGGATATGGTGCTCCTGGTCTTGCACAGCCTTTGATGTATGGACCGGGTCAAACTCCCGCTGGAATGGCCATGATGCCGATGCTTCTGGCTGATGGACGCATTGGATATGTCTTGCAACAGCCAGGATTGCAGCCAGGATTGCCCCCACAAACCCCTCCTTCACATCAAAGAGGTGGCAGGAGTAGTGGAGGCGGCGGAAGTAGTGGTGGGAGTGGCAGCAGGAATACGGGCAGTTCAAGTAAGGGAAGGCACAGCAATGATAATGGTCATGGGCGAAGATACCACCCTTATTAG 1512 0.4286 MPVEKPSSSRVIGKQSEPEKPVESDEKVNLEEEPEEEMEEEIEYEEVEEEEEVEEIEEEVEEEEEDPEEVEVEVEVEEEEEEEEEEEEEEVEEDTNIDDDEKKKHAELLSLPPHKSEVYIGGIPLDALMEDLKDFCERIGEVVQVRIMKGKDSSENKGFAFVLFKNEELASKAIEDLNNTEFKGKKIRCSTSQAKNRLFIGNIPRSWGDKDLKKVVSEIGPGVTAVELVKDMKNIINNRGFAFIDYYNNACAEYSRQKMMNPTFKLGDNSPTVSWADPKNSDSSASSQVKAVYVKNLPNNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNTERYELEGRMLECSLAKPQADQKAVVSNIQNQGLLPSYPPHLGYGLIGNPYGALGAGYGAPGLAQPLMYGPGQTPAGMAMMPMLLADGRIGYVLQQPGLQPGLPPQTPPSHQRGGRSSGGGGSSGGSGSRNTGSSSKGRHSNDNGHGRRYHPY 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00391 503 Gene3D - 278 383 IPR012677 -
Vifa6g00391 503 Gene3D - 197 277 IPR012677 -
Vifa6g00391 503 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 279 388 - -
Vifa6g00391 503 CDD RRM_SF 118 190 - -
Vifa6g00391 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Vifa6g00391 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 361 IPR000504 GO:0003723
Vifa6g00391 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 261 IPR000504 GO:0003723
Vifa6g00391 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Vifa6g00391 503 SMART rrm1_1 197 274 IPR000504 GO:0003723
Vifa6g00391 503 SMART rrm1_1 291 364 IPR000504 GO:0003723
Vifa6g00391 503 SMART rrm1_1 117 190 IPR000504 GO:0003723
Vifa6g00391 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Vifa6g00391 503 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 197 277 - -
Vifa6g00391 503 MobiDBLite consensus disorder prediction 445 503 - -
Vifa6g00391 503 MobiDBLite consensus disorder prediction 1 102 - -
Vifa6g00391 503 SUPERFAMILY RNA-binding domain, RBD 116 281 IPR035979 GO:0003676
Vifa6g00391 503 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 492 - -
Vifa6g00391 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 278 IPR000504 GO:0003723
Vifa6g00391 503 Coils Coil 30 97 - -
Vifa6g00391 503 Gene3D - 4 196 IPR012677 -
Vifa6g00391 503 SMART rrm2_1 291 364 IPR003954 GO:0003676
Vifa6g00391 503 SMART rrm2_1 117 190 IPR003954 GO:0003676
Vifa6g00391 503 MobiDBLite consensus disorder prediction 460 490 - -
Vifa6g00391 503 SUPERFAMILY RNA-binding domain, RBD 282 383 IPR035979 GO:0003676
Vifa6g00391 503 MobiDBLite consensus disorder prediction 28 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00391 Vifa-Chr6 157280963 157290067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00391 132 452 Eukaryotic Initiation Factors Gene Family AT4G34110 26.796 1.92e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00391 K13161 - gmx:100806658 613.994