Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00390 ATGGCAGAGGCGGAGGAGCTTCCCAAAACTATCGTACGCCGCGTGGTGAAGGAAAAGCTATCCACTTGCTCCGACGACGGAGACATTGCCGTCCACAAAGACGCTCTTCTCGCATTCTCCGAAAGTGCCAAAATCTTCATCCACTACCTTTCCGCTACGGCTAATGATATATGTAAGGAGTCAAAGAGGCAAATTATCAATGCTGAAGATGTTCTCAAAGCTCTTGAAGAAACTGAGTTTACTGAATTTGTTAACCCTCTAAAAGATTCTCTTGAAGAGTTTAGGAAGAAGAATGCTGGGAAGAAAGCAAGGGTGTCAAAGGGAAAGGGAGATGAGAAGGGAAAGAAAAGAAAGTTGGAAGGTGAGCTGTCTGATAAAGGTGAGCCATCTGGAAAAGGCGATAAAGGTGAGCCATCTGAAAAAGGCGATAAAGGTGAGCCATCTGAGAAAGGCGATCAAGGTGAGCCATCTGAGAAAGGCGATCAAGGTGAGCCATCTGAGAAAGGCGAACAAGGTGAGCCATCTGAGAAAGGCGAACAAGGTGATGATGATGACCTATGGCATTAG 567 0.4603 MAEAEELPKTIVRRVVKEKLSTCSDDGDIAVHKDALLAFSESAKIFIHYLSATANDICKESKRQIINAEDVLKALEETEFTEFVNPLKDSLEEFRKKNAGKKARVSKGKGDEKGKKRKLEGELSDKGEPSGKGDKGEPSEKGDKGEPSEKGDQGEPSEKGDQGEPSEKGEQGEPSEKGEQGDDDDLWH 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00390 188 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 6 75 IPR003958 -
Vifa6g00390 188 Gene3D Histone, subunit A 1 144 IPR009072 GO:0046982
Vifa6g00390 188 FunFam DNA polymerase epsilon subunit 3 1 143 - -
Vifa6g00390 188 SUPERFAMILY Histone-fold 7 115 IPR009072 GO:0046982
Vifa6g00390 188 PANTHER DNA POLYMERASE EPSILON SUBUNIT 3 4 150 - -
Vifa6g00390 188 MobiDBLite consensus disorder prediction 94 188 - -
Vifa6g00390 188 Coils Coil 58 78 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00390 7 117 CCAAT-HAP3 Transcription Factor Family AT3G53340 33.333 4.67e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa6g00390 CBFD_NFYB_HMF 1.6e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00390 K02326 - gmx:100306382 211.46