Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00382 ATGGCTAGCCATAGAGTTGGAGAGATTGGTTTGTCTGAGTCAGGACCTTCAAGTCAACATGTCCCTTATGGTGTTCTTCATGGAATCACTACCTCAACATCAACCTTAATGAATCAAGGGTCTACTTTTGATTTTGGAGAACTTGAAGAGGCAATTGTTCTTCAAGGAATCAAGATAAGAAACGATGAAGGAAGCAAACCAGCAGCTACACTTGAAATGTTCCCTTCATGGCCAATTAGGTTCCAACAAACACCAGGAGTTGTTGCTTCTCTCACTTCTCCATCTTTGACCAATCCATATGGAGGAGGTTCAAAATCTGGAGGTGAAAGTAGTGAATCAGCATCAACAGAAATTCAATTTGAAACAGGTTCACCAATAAGTATAAAAGCATCTTCTTCTTCTGATCATCATCATGGTAATCATGGTTTTGATCAGATTCAGCAGCAACAAGAGATAGCAACAACTGATGAAGCTGCTCTAAGAACAGGCACATCACAGAATCATTCAAAAGCCAAATCTCCTCAACAAAAGAAAAAAGGAGCTGTTTCCACATCAGAAAAGACACTTGATCCAAAGACACTGAGAAGATTGGCACAAAATAGAGAAGCTGCAAAGAAAAGCCGTCTTAGAAAAAAAGTTTATGTACAACAGCTAGAATCAAGTAGATTAAGATTATCGAATCTCGAACAAGAGATACAAAGAGCGCGATCGCAGGGACTATTTTTGGGATGTGGTGGTGGAAATATTAGCCCTGGAGCTGCGATGTTTGACATGGAGTATGCAAGATGGTTAGAGGAAGATCAACGACTCTTGACTGAGCTTCGTGGCGGGCTGCATGCAGCATTGGCGGATAATGAACTGAGAGTGATTGTTGATGGATATCTTTATCATTACGACGAGCTCTTCCGATTAAAGGAAGTCGCTGTTAAATCAGATGTTTTTCACCTTATTAAAGGTATTTGGACTTCTCCGGCCGAACGACCGTTCATTTGGTTAGGTGGTTTCAAGCCCTCCGAGCTCATCACGATGTTGACACAACAATTGGAGCCTTTAGCTGAGCAACAAATAGTAGGGATAATGGAGCTAAGACAATCATCACACCAAGCAGAAGATGCTCTCTCTCAAGGCCATGAACAGCTCCACCATTGTATTGTCGACACCATTGCCGGAGGGCCGGTCATCGACGGTGTTCAACAGATGGTCGCTGCCATGGCCAGAATCTCCAACCTTGAAGGATTTGTCCATCAGGCCGATAATTTGAGACAACAAACTCTTCATCAATTATGTCGAATATTAACTGTCCGTCAAACAACAAGATGTTTCATTGTAATCGGAGAATATTATGGACGCCTTCGAGCTCTTAGTTCTCTTTGGGCTTCAAGACCACGAGAGAACTTGATGAACGATGATAATTCATGTCAAGCAACAACGGAATTGCAAATGATTCAACCTTCTCAAAGTCATTTCTCGAGTTTCTGA 1479 0.4192 MASHRVGEIGLSESGPSSQHVPYGVLHGITTSTSTLMNQGSTFDFGELEEAIVLQGIKIRNDEGSKPAATLEMFPSWPIRFQQTPGVVASLTSPSLTNPYGGGSKSGGESSESASTEIQFETGSPISIKASSSSDHHHGNHGFDQIQQQQEIATTDEAALRTGTSQNHSKAKSPQQKKKGAVSTSEKTLDPKTLRRLAQNREAAKKSRLRKKVYVQQLESSRLRLSNLEQEIQRARSQGLFLGCGGGNISPGAAMFDMEYARWLEEDQRLLTELRGGLHAALADNELRVIVDGYLYHYDELFRLKEVAVKSDVFHLIKGIWTSPAERPFIWLGGFKPSELITMLTQQLEPLAEQQIVGIMELRQSSHQAEDALSQGHEQLHHCIVDTIAGGPVIDGVQQMVAAMARISNLEGFVHQADNLRQQTLHQLCRILTVRQTTRCFIVIGEYYGRLRALSSLWASRPRENLMNDDNSCQATTELQMIQPSQSHFSSF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00382 492 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 190 234 IPR004827 GO:0003700|GO:0006355
Vifa6g00382 492 Gene3D - 191 240 - -
Vifa6g00382 492 SMART brlzneu 188 250 IPR004827 GO:0003700|GO:0006355
Vifa6g00382 492 PANTHER TRANSCRIPTION FACTOR TGA9 128 464 - -
Vifa6g00382 492 MobiDBLite consensus disorder prediction 161 182 - -
Vifa6g00382 492 ProSiteProfiles DOG1 domain profile. 253 461 IPR025422 GO:0006351|GO:0043565
Vifa6g00382 492 MobiDBLite consensus disorder prediction 161 192 - -
Vifa6g00382 492 FunFam BZIP family transcription factor 191 240 - -
Vifa6g00382 492 CDD bZIP_HBP1b-like 192 243 - -
Vifa6g00382 492 MobiDBLite consensus disorder prediction 1 21 - -
Vifa6g00382 492 Coils Coil 211 238 - -
Vifa6g00382 492 Pfam bZIP transcription factor 192 225 IPR004827 GO:0003700|GO:0006355
Vifa6g00382 492 Pfam Seed dormancy control 271 345 IPR025422 GO:0006351|GO:0043565
Vifa6g00382 492 MobiDBLite consensus disorder prediction 90 118 - -
Vifa6g00382 492 SUPERFAMILY Leucine zipper domain 192 233 IPR046347 GO:0003700|GO:0006355
Vifa6g00382 492 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 195 210 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00382 Vifa-Chr6 154829245 154832522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00382 164 492 bZIP Transcription Factor Family AT1G08320 66.566 4.58e-162 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa6g00382 DOG1 2.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00382 K14431 - gmx:100101904 638.647