Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00376 ATGGCTATGATGGAGTATGATGTAGAAGACAATAATTTCATTGAGTGGCTCAAACCATCTAATAATTCCTCTCTTTCATATCTATCTTCTTCTTCTTCATCATCATCATCTTTTTCTACCACTCAAAATGATCTTGTTCATGAGACTTTTCAATTCTTTCCTTTGAGTGCAAAAGCATCAAAAGAGGAAGATCATGAAGTACCAAAAATGGAGGGTTTTTATGTGAAAGAAGAAAATATTAATGTGGCTTTGCATATTGGATTACCTAACAATAAAGAAGATATTGATGATGATGAGAAGAAGATTTTCCATGTTAAGAAAGAAGAAGAGATTTGTAAGAAAAGTTTTCAAAGGTTTTGGATACCAACTCCTGCACAGATTCTTGTTGGACCTATGCAGTTTATTTGCTCCATATGCAACAAAATCTTCACTAGGTTTAACAACATGCAGATGCATATGTGGGGTCATGGATCTGAATTTAGGAAAGGAGCAGAATCACTTAGAGGAACACAACCAGCTGCAATGCTAAGACTAGCATGCTATTGTTGTGCTCAAGGTTGCAAGAACAACATTAATCATCCAAGAGCTAAGCCTTTGAAAGACTTCAGAACTCTTCAAACTCATTACAAAAGAAAACATGGGACTAAACCTTTTATGTGTAGGAAATGTGGGAAAACATTAGCTGTTAAAGGTGATTGGAGGACTCATGAAAAGAATTGTGGTAAGTTGTGGTATTGTTCATGTGGTTCGGATTTTAAACACAAGAGATCTCTCAAAGATCATGTTAGATCTTTCGGAAAGGGTCATATTCGACTTCTGAGTCCCGATGACCGAGCTTTTGATGAAGAGAAGGAATGTGTTACTGGTTCAATTGAAGATGGAATTGTTCGTATATGA 897 0.359 MAMMEYDVEDNNFIEWLKPSNNSSLSYLSSSSSSSSSFSTTQNDLVHETFQFFPLSAKASKEEDHEVPKMEGFYVKEENINVALHIGLPNNKEDIDDDEKKIFHVKKEEEICKKSFQRFWIPTPAQILVGPMQFICSICNKIFTRFNNMQMHMWGHGSEFRKGAESLRGTQPAAMLRLACYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHVRSFGKGHIRLLSPDDRAFDEEKECVTGSIEDGIVRI 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00376 298 SMART c2h2final6 134 156 IPR013087 -
Vifa6g00376 298 SMART c2h2final6 181 213 IPR013087 -
Vifa6g00376 298 SMART c2h2final6 218 238 IPR013087 -
Vifa6g00376 298 FunFam Zinc finger protein WIP2 187 269 - -
Vifa6g00376 298 Gene3D Classic Zinc Finger 177 267 - -
Vifa6g00376 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 161 IPR013087 -
Vifa6g00376 298 SUPERFAMILY beta-beta-alpha zinc fingers 203 242 IPR036236 -
Vifa6g00376 298 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Vifa6g00376 298 PANTHER ZINC FINGER PROTEIN WIP2 18 276 IPR043584 GO:0003700|GO:0010468
Vifa6g00376 298 SUPERFAMILY beta-beta-alpha zinc fingers 110 157 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00376 Vifa-Chr6 153265801 153267852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00376 9 288 C2H2 Transcription Factor Family AT1G08290 52.727 8.51e-108 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g00376 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00376 - - gmx:100802773 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02297 1 369219423 369221055 Vifa6g00376 6 153265801 153267852 PCT