Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00372 ATGGCGGAAGAACATCGTTGCCAAGCTCCGCGTCTCTGTGCGAACAACTGCGGTTTCTTCGGGAGTCCGGCTATGCAGGATCTCTGTTCTAAATGTTACCGTGATTTGCAGGTCAAGGAACAGCGATCTTCGTCGGCGAAACTGGTTCTCAATCAAACGCTAATTCCTCCTCAGGCGGTGGTTTCGGTGGTTCCTCAGGAGGTTGTTGTTGTTCAACCTTCTTCTCAGGAGGTGGTTGAGTCTTTGCCGGCGGCGGTGGTCGAGACTGTTGTTGGAACATCGGGGCAGGCGAATCCGAATCCGAATCGGTGTGGTTGTTGTAGGCGGCGCGTGGGGCTGACGGGATTCAAGTGCAGGTGCGGGTTGACGCTGTGTGGGTCCCATAGGTATCCAGAGCAACACGGGTGTGGGTTCGATTTTAAGGGGATGGGGAGAGAGCAGATCAAGAAGGCGAATCCGGTCGTGAAGGGAGAGAAGTTGAACAAGATCTGA 492 0.5447 MAEEHRCQAPRLCANNCGFFGSPAMQDLCSKCYRDLQVKEQRSSSAKLVLNQTLIPPQAVVSVVPQEVVVVQPSSQEVVESLPAAVVETVVGTSGQANPNPNRCGCCRRRVGLTGFKCRCGLTLCGSHRYPEQHGCGFDFKGMGREQIKKANPVVKGEKLNKI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00372 163 Gene3D - 81 159 IPR035896 -
Vifa6g00372 163 ProSiteProfiles Zinc finger AN1-type profile. 98 144 IPR000058 GO:0008270
Vifa6g00372 163 Pfam AN1-like Zinc finger 104 140 IPR000058 GO:0008270
Vifa6g00372 163 SUPERFAMILY AN1-like Zinc finger 96 158 IPR035896 -
Vifa6g00372 163 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Vifa6g00372 163 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Vifa6g00372 163 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Vifa6g00372 163 Gene3D - 1 53 - -
Vifa6g00372 163 SMART AN1_Zf_4 104 141 IPR000058 GO:0008270
Vifa6g00372 163 FunFam Zinc finger AN1-type containing 6 79 159 - -
Vifa6g00372 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 57 - -
Vifa6g00372 163 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00372 Vifa-Chr6 152125156 152125647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00372 1 163 C2H2 Transcription Factor Family AT3G52800 45.506 1.52e-43 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00372 - - pcin:129295477 216.853