Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00367 ATGAGAACAATTTTCACAACAAATGGTAGCTGTGGATCATGCGTAAAACCAAAAGCCATTCAAGTCCACGAACCAACCCTAAAGTCAAAAAATTCCATTAAACAACCTAAGGTCACAAGTCCAAGTAGCAAAACTTCTTCTACAACAACCTCCGGCGACCGAAACAACGCGGTTTGCAGCGTCGATGACAGCGACGAATTCTCAACCACCACGTTCTCGGAAGCCGATACAGTAAACAACTACTCCGCACCCAAGCAGAGTCCATTAATGAACACCGTTGCCGTCGAGAAGGACTCTCAAGATCCGTATCATGATTTCAAACACTCCATGCTTCAAATGATCTTCGAGAATGAGATCGATTCGAAAGATGATCTTCAAGATCTTCTCAGGTGCTTTCTTCATCTGAATGAATCATGTTATCATCGTGTGATCGTTAAAGTCTTCAATGAAATCTGTCATGAAGCTTTTCCTGATAAGGATTGTAGTATTGCTACCAATCTTTCGAATGAAGATTGA 516 0.4167 MRTIFTTNGSCGSCVKPKAIQVHEPTLKSKNSIKQPKVTSPSSKTSSTTTSGDRNNAVCSVDDSDEFSTTTFSEADTVNNYSAPKQSPLMNTVAVEKDSQDPYHDFKHSMLQMIFENEIDSKDDLQDLLRCFLHLNESCYHRVIVKVFNEICHEAFPDKDCSIATNLSNED 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00367 171 ProSiteProfiles OVATE domain profile. 95 154 IPR006458 -
Vifa6g00367 171 MobiDBLite consensus disorder prediction 25 57 - -
Vifa6g00367 171 Pfam Transcriptional repressor, ovate 99 154 IPR006458 -
Vifa6g00367 171 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 33 155 IPR038933 GO:0045892
Vifa6g00367 171 NCBIfam uncharacterized plant-specific domain TIGR01568 93 153 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00367 Vifa-Chr6 151103987 151104502 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vifa6g00367 Ovate 4.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00367 - - mtr:11445731 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02202 1 354124081 354124623 Vifa6g00367 6 151103987 151104502 PCT