Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00365 ATGTCCGGCACCCGAGCTCCTCCCGCCGCCGCTGCCTCTCCCTCCAATCCGCCGGAACAGATCATGAAACGACAACCGCCGTTTTCCTCCTTGAAACCTCCCTTTGTAGCTTCCGGTGATTATCACCGGTTTGCACCTGACCAACGAAGAAATCTTGATCAGGAAACTGAAGCTATCGTCGTTAAGACTCCTCAACTGAAGCGGAAAAGTGAAGCAGCTGGTTTTGAAGCTGATTCAAGTGTTAGGATGACTCCTGGATCCACTGAAGCAGCCAATAGTCCTTCTCAGACGCCTGTATCCGGAAAGACAGGGAAGGGAGGCAAATCCTCTAGGCTGACAAAATGCAACAGATCTGGAACTCAAACCCCAGGCTCAAATATTGGTTCTCCTTCAGGAAACAATCTCACCCTTGCTGGTCCATGTCGATATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTCATCAATTTAATTAAACAAGCAGAGGATGGTATTCTTGATCTAAATAAAGCTGCCGACACATTAGAGGTGCAAAAGAGGAGAATATATGATATAACAAATGTTCTTGAAGGGATCGGCCTTATAGAGAAAAAGCTCAAGAACAGAATTCAGTGGAAGGGCCTAGATGTTTCAAAACCAGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGGCAGAAATTGAAAATTTAACAATGGAGGAACGCCGGTTAGATGAACAAATAAGGGTGATGCAAGAAAGACTACGGGATCTTAGCGAAGATGAAAATAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAACCTGCCCTGCTTCCAGAATGAAACATTGATAGCAATTAAAGCTCCACATGGAACCACTTTGGAAGTCCCTGATCCTGATGAGGCCGCTGATTATCCGCAGAGGAGATACAGGATAGTCCTGAGAAGTACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATCAATGGTGTTGAGGTTGCACCCAAAATCCCATCTAGTCCAGAGGTTAGCCAGCATCCGTCAACTGTGGTCCCAGAGGACAAAGGGAAGGAAATAGAAGTGCAGAGACCAGACGGTGAAGGGCCTAGTTCAGATCTTACCCACAATCACGACTTTGTGAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGCGATGCCGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACCGACATGTGGAGAACAGAACCCGGAGTTGAGTGGAATGAACTCAATGCACTTCAAGAAGATTTTTGTATGGCTCGTGAGGACAATACAACCCCAAATCATCCTTCGAACACAGGTGAAGAGTCTTCTGCAGCCAAGCCTTGA 1377 0.4517 MSGTRAPPAAAASPSNPPEQIMKRQPPFSSLKPPFVASGDYHRFAPDQRRNLDQETEAIVVKTPQLKRKSEAAGFEADSSVRMTPGSTEAANSPSQTPVSGKTGKGGKSSRLTKCNRSGTQTPGSNIGSPSGNNLTLAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSKPGEADDSFASLQAEIENLTMEERRLDEQIRVMQERLRDLSEDENNEKLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAADYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVEVAPKIPSSPEVSQHPSTVVPEDKGKEIEVQRPDGEGPSSDLTHNHDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELNALQEDFCMAREDNTTPNHPSNTGEESSAAKP 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00365 458 MobiDBLite consensus disorder prediction 1 133 - -
Vifa6g00365 458 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
Vifa6g00365 458 MobiDBLite consensus disorder prediction 355 369 - -
Vifa6g00365 458 Coils Coil 158 178 - -
Vifa6g00365 458 MobiDBLite consensus disorder prediction 436 458 - -
Vifa6g00365 458 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Vifa6g00365 458 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Vifa6g00365 458 Gene3D - 214 324 - -
Vifa6g00365 458 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Vifa6g00365 458 FunFam E2F transcription factor 1 136 209 - -
Vifa6g00365 458 MobiDBLite consensus disorder prediction 440 458 - -
Vifa6g00365 458 MobiDBLite consensus disorder prediction 81 133 - -
Vifa6g00365 458 SUPERFAMILY E2F-DP heterodimerization region 221 324 IPR037241 -
Vifa6g00365 458 CDD E2F_DD 218 324 IPR032198 GO:0046983
Vifa6g00365 458 Gene3D - 138 209 IPR036388 -
Vifa6g00365 458 PANTHER TRANSCRIPTION FACTOR E2F 81 419 IPR015633 GO:0000978|GO:0006357
Vifa6g00365 458 Coils Coil 220 254 - -
Vifa6g00365 458 MobiDBLite consensus disorder prediction 340 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00365 Vifa-Chr6 150633970 150640145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00365 23 457 E2F-DP Transcription Factor Family AT5G22220 57.235 2.04e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa6g00365 E2F_CC-MB 6.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00365 K06620 - gmx:100819817 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00365 6 150633970 150640145 Vifa6g00365 6 150633970 150640145 ECH