Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00361 ATGGCCATGAGTGTAGATCATGATGATGGTGTTCACGCTGGTTTCACGTGGGAAAATCAATCATGGAGTGATATCTTGAATTCTGAAAACATAGGTGAGAGTAGCAAACAAAAGTTAGATATGAAATCATTGAAGCGTAAAGAAGGACTTAATGAAGGAGAAGTTCATGTGAATAAAAAACTAAGCAAAGGTAGGTGTGTGATTAGAAGTGAGAATGATATTGATGGTGAAGGTAAAGATGAAATGTATCGTGATTTTGATCATGAAATGCATATCTTCACCGAGAGAGAAAGGAGAAAGAAAATGAAGAACATGTTCTCTACTCTTCATGCTTTGCTTCCTGAACTACCTTCTAAGGCTGGTAAATACACAATTGTAGATGCAACAATGAAGAAAATAAAAACCCTAGAGCAAACTATTGAAAATTTGGAAAAGGAGAAGCAAGAAAAGCTTAAATATGTATCCCTATTTGGAAGTGAGTCACCATCTGTGATAAAAAAATCACATTGGGACCCCTATGAATCCAAGGAAACAATCATAGCTGATCATGGATCCTTAAATTATAATAATAATTTTTCTACTAGTCTAATGGTAAATTCATATCCTAATTCAAAAGCATTAGGGCAATCTGCACCTCCACTAAATCAAGTAGCTTTTCAAACATGGTATTATCAAAATGTTGTCTTAAGTATTTGTGGTGGTCAAGCACAATTTTGCATATGTGCTACTAAAATGTTAGGTCTTTTGACAAGAATTGCTTTTGTGTTAGAAAAATATTGGATTGATGTTGTATCTGCCAGTATTACATGCAATGGAAATGGAAAATTCTACATGATTTTGGCTAATGTTAGACAATGTTTACATGATTCAATTTCAATGGAGGAAACTTACAAGCAAGCTGCTAGAGAAATTATGATGTGGATCTCTTAA 930 0.3387 MAMSVDHDDGVHAGFTWENQSWSDILNSENIGESSKQKLDMKSLKRKEGLNEGEVHVNKKLSKGRCVIRSENDIDGEGKDEMYRDFDHEMHIFTERERRKKMKNMFSTLHALLPELPSKAGKYTIVDATMKKIKTLEQTIENLEKEKQEKLKYVSLFGSESPSVIKKSHWDPYESKETIIADHGSLNYNNNFSTSLMVNSYPNSKALGQSAPPLNQVAFQTWYYQNVVLSICGGQAQFCICATKMLGLLTRIAFVLEKYWIDVVSASITCNGNGKFYMILANVRQCLHDSISMEETYKQAAREIMMWIS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00361 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 151 IPR036638 GO:0046983
Vifa6g00361 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 136 IPR011598 GO:0046983
Vifa6g00361 309 Coils Coil 126 153 - -
Vifa6g00361 309 Gene3D - 81 152 IPR036638 GO:0046983
Vifa6g00361 309 CDD bHLH_AtbHLH_like 91 144 IPR045239 -
Vifa6g00361 309 Pfam Helix-loop-helix DNA-binding domain 90 141 IPR011598 GO:0046983
Vifa6g00361 309 SMART finulus 92 142 IPR011598 GO:0046983
Vifa6g00361 309 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 31 308 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00361 Vifa-Chr6 148801036 148802203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00361 87 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.950 1.92e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g00361 HLH 6.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00361 - - psat:127104614 458.373