Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00355 ATGAAGGTTGAGGATTTCATGTTTCTTCTATTTTCTCTTATGGTTATTATTACATTGTGTTATGGTAAAACTGACCCAAATGATCTCAAGGTTCTGAATGATTTCAGAAAAGGGTTGAAGAATCCAGAGCTTCTCAAATGGCCTGAAAATGGAGATGATCCATGTGGTCCACCTCAATGGAGTTATGTGTTTTGTAACAATGGTAGAGTTACTCAGATTCAAGCTAAGAATCTTGGTCTTAAAGGTTCTTTGCCTTCAAATTTTAACCATCTTTCTGAGCTTCAAAATTTAGGTCTACAAAGAAATAATTTGTCTGGAATGTTACCTAGTTTGAGTGGATTATCTAAATTGCAGTATGCTTATTTGGATTACAATGAATTCGACGGAATCCCGATGGATTTCTTCGAAGGACTCGATAGTCTTGAGGTTTTGTCTTTGGAAGTAAACCCTTTGAATGCTACTAATGGCACATTGTCGTCTTTATCGAATTTGAGGCTTTCGAATAACAGACTTTCGGGGGAAATTCCGGGTAGTTTCGGGCAATCGTCGGTGCAGGTGCTATGGTTGAATGATCAACAAGGTGGTGGTATGACAGGTTCTATAGATGTTATTGCTTCAATGACATTTTTGACAGAGGTTTGGTTACATGGAAACACGTTCACCGGGGCGATTCCGTCGAATATCGGGAATTTAACGTCTCTTCGGGATCTTAACCTCAATCGTAATCAACTTGTTGGTTTGATTCCGGATTCATTGGCAAATATGGAACTTCAAAAACTTGATTTAAGTAATAACATGTTCGTCGGTCCAATACCGAAGTTTAAGGCTGCACAAGTATTGTATGGTTCGAATTCGTTTTGTCAAACTAAACCTGGTGTTGAATGTGATCCTAATGTTAATATATTGTTGAATTTTCTCGCCGGTTTGAATTATCCGTCATTTGTTGTTACTAAATGGGTTGGTAATGATCCTTGTGGAGGATCATGGTTTGGATTGAGCTGCATTCGTAACTCGGTATCAATAATCAATCTGCCTAGAAGAAATCTTACCGGTACGTTGAGTCCTCTTCTTTCTATGTTAGATTCGATACTTGAAATTAGGCTTTCGGGTAACAATATAACCGGTAAGGTTCCTAGTAATTTTACTGAATTGAAATCTTTGAGGCTGTTGGATTTAAGTGATAACAATTTCGAACCTCCATTGCCAAAATTTCGTGATGGCGTGAAGGTTATCGTTGGCGGTAACCCTCTTTTTGATAATCAGCCTCGACCGAGTCCTGCTCCTATTTTAAGTCCGCCTCCTTTAATCGAACCACCTTCACCTCCACCTCCACGCAATGTGCCACAGCCACAACCAAAGCCACCCCCATCCTCGGATAGTCCACCTTCCCCTAGTGAAAGTTCAAGATCCAACCAGTCTAGGAATGTCGAAGCAAATCCTCAACCGAGAAATTCGAGTAGACTCAAAACAGTAGCGATGGTGGCTGGAGGTGTAGTCTTTGGATTTGTAGCTCTTTCGGTTATTGTTTTCTTTGTATGTTGTTGTTCGAAAAAGAAAAAGAAGAAAGGCTCAGTTGATGCATCTAGCTCTGCCGTGGCTCACGCTCAAGATTCGTCCGATCCAAAAGTGATGGTTAAACTTGCGGTGTCGGATACCACCGGGAGCTTATCGACAAATACAGGAATAAGTTCTCTGACTAACAATAGCGGCGAAACTGAAAGCTATCATGTAATTGAGTCTGGTAACCTTGTCATATCGGTTCAAGTTCTACGCAAGGTCACAAACAATTTTGCTAAGGAAAATGAGCTAGGCCGTGGTGGGTTTGGAACTGTTTACAAAGGCGAACTAGAAGATGGGACGAAAATAGCGGTGAAAAGAATGGAATGTGGAACCATTAGCAGTAAAGGACTCGACGAGTTTCAAGCAGAAATCGCCGTTCTTTCCAAAGTTCGGCACCGACATTTGGTATCCCTTTTAGGCTATTCCATTGAAGGAAATGAGAGGCTTTTGGTTTATGAATACATGCCTCTTGGGGCTCTAAGCAGACACCTTTTCCATTGGAAAAGCTTGAATTTGGACCCATTGTCGTGGACTCAGAGGCTTGTTATAGCATTAGATGTTGCTAGAGCGGTGGAATACCTTCATAGTCTTGCTCGACAAATCTTCATTCATCGAGACCTGAAGTCTTCAAATATTCTACTTGGTGATGATATTCGAGCAAAAGTCGCTGATTTTGGTTTGGTGAAACTTGCGCCCGACGGTGAAAAGTCTATGGCAACAAAACTTGCTGGAACATTTGGATACCTTGCCCCCGAATATGCAGTAATGGGAAAAATCACGACAAAAGTGGACGTATTCAGCTACGGTGTCGTGTTGATGGAACTTCTGACCGGACTAATAGCTCTCGACGAAAGCCGACCAGAGGAAAACCGGTACTTAGCGGAATGGTTTTGGCAAATAAAATCAAACGAAGAAAAGCTCAAGGCTGCAATCGATCCATCCCTTGAAGTAAACGAAGAAACATTCGAGAGTATCTCAATCGTAGCCGAACTTGCTGGACATTGCACCGCCCGGGAAGCCAACCATAGGCCGGACATGGGGCACGCTGTCAAAGTGCTATCAGAGTTAGTAGAGAAATGGCGACCGGTTGACGAGGAGTTTGATTACACCGGCGGAATCGACTTTGGTCAACCGCTTCCGCAAATGTTGAAGATTTGGAAGGAAGCAGAAGGGAAAGATATAAGCTATGCAAGTAGTACTAATGATAGTAAAGGAAGTATACCAGCTAAGCCTTCTGGTTTTGCAGATTCCTTTACTTCATCTGATGCTAGATGA 2835 0.4201 MKVEDFMFLLFSLMVIITLCYGKTDPNDLKVLNDFRKGLKNPELLKWPENGDDPCGPPQWSYVFCNNGRVTQIQAKNLGLKGSLPSNFNHLSELQNLGLQRNNLSGMLPSLSGLSKLQYAYLDYNEFDGIPMDFFEGLDSLEVLSLEVNPLNATNGTLSSLSNLRLSNNRLSGEIPGSFGQSSVQVLWLNDQQGGGMTGSIDVIASMTFLTEVWLHGNTFTGAIPSNIGNLTSLRDLNLNRNQLVGLIPDSLANMELQKLDLSNNMFVGPIPKFKAAQVLYGSNSFCQTKPGVECDPNVNILLNFLAGLNYPSFVVTKWVGNDPCGGSWFGLSCIRNSVSIINLPRRNLTGTLSPLLSMLDSILEIRLSGNNITGKVPSNFTELKSLRLLDLSDNNFEPPLPKFRDGVKVIVGGNPLFDNQPRPSPAPILSPPPLIEPPSPPPPRNVPQPQPKPPPSSDSPPSPSESSRSNQSRNVEANPQPRNSSRLKTVAMVAGGVVFGFVALSVIVFFVCCCSKKKKKKGSVDASSSAVAHAQDSSDPKVMVKLAVSDTTGSLSTNTGISSLTNNSGETESYHVIESGNLVISVQVLRKVTNNFAKENELGRGGFGTVYKGELEDGTKIAVKRMECGTISSKGLDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKSLNLDPLSWTQRLVIALDVARAVEYLHSLARQIFIHRDLKSSNILLGDDIRAKVADFGLVKLAPDGEKSMATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLIALDESRPEENRYLAEWFWQIKSNEEKLKAAIDPSLEVNEETFESISIVAELAGHCTAREANHRPDMGHAVKVLSELVEKWRPVDEEFDYTGGIDFGQPLPQMLKIWKEAEGKDISYASSTNDSKGSIPAKPSGFADSFTSSDAR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00355 944 Pfam Leucine rich repeat 210 266 IPR001611 GO:0005515
Vifa6g00355 944 Pfam Protein kinase domain 598 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00355 944 FunFam Leucine-rich repeat receptor-like kinase 297 421 - -
Vifa6g00355 944 MobiDBLite consensus disorder prediction 421 462 - -
Vifa6g00355 944 FunFam receptor protein kinase TMK1 675 892 - -
Vifa6g00355 944 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vifa6g00355 944 Pfam Leucine rich repeat N-terminal domain 300 334 IPR013210 -
Vifa6g00355 944 SMART LRR_typ_2 91 113 IPR003591 -
Vifa6g00355 944 SMART LRR_typ_2 231 254 IPR003591 -
Vifa6g00355 944 SMART LRR_typ_2 158 181 IPR003591 -
Vifa6g00355 944 SMART LRR_typ_2 114 137 IPR003591 -
Vifa6g00355 944 SMART LRR_typ_2 384 406 IPR003591 -
Vifa6g00355 944 SUPERFAMILY L domain-like 299 403 - -
Vifa6g00355 944 ProSiteProfiles Protein kinase domain profile. 597 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00355 944 Gene3D Transferase(Phosphotransferase) domain 1 675 889 - -
Vifa6g00355 944 MobiDBLite consensus disorder prediction 463 484 - -
Vifa6g00355 944 MobiDBLite consensus disorder prediction 917 944 - -
Vifa6g00355 944 SMART serkin_6 597 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00355 944 MobiDBLite consensus disorder prediction 415 484 - -
Vifa6g00355 944 SUPERFAMILY Protein kinase-like (PK-like) 571 873 IPR011009 -
Vifa6g00355 944 CDD STKc_IRAK 603 876 - -
Vifa6g00355 944 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Vifa6g00355 944 PANTHER OSJNBA0070M12.3 PROTEIN 9 944 - -
Vifa6g00355 944 Gene3D Ribonuclease Inhibitor 26 293 IPR032675 -
Vifa6g00355 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672|GO:0006468
Vifa6g00355 944 FunFam receptor protein kinase TMK1 559 674 - -
Vifa6g00355 944 SUPERFAMILY L domain-like 25 275 - -
Vifa6g00355 944 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 228 - -
Vifa6g00355 944 Gene3D Phosphorylase Kinase; domain 1 558 674 - -
Vifa6g00355 944 Gene3D Ribonuclease Inhibitor 296 418 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00355 Vifa-Chr6 146895744 146898994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00355 480 881 Trihelix Transcription Factor Family AT1G68690 39.268 8.83e-74 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vifa6g00355 Pkinase 7.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00355 - - cam:101505581 1368.6