Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00352 ATGGGTTTTTTGTTGAAAGAAGGTTTGAAGAGTCTTTGTGGTAGGAATCAATGGTGTTATGCTGTTTTTTGGAAGATCGGTTGCAATAATTCCAAGCTGTTAATCTGGGAAGATTGCTACTATGAACCATTGCCATCTCGTTACTTTCCACAAGTCGCTGGAACGTCGAACTTGCCGTACCGAGATAGGGAAGGATGTTGGTTTTCTTCGGATTCTCAGCTAAGGGTTCAAGAGGATGACAGAGTTTGTTCATTGATTAACAAAATGATGGTGAATAATTCGGTTAATGTTGCCGGTCAAGGGATACTCGGACGGGCGGCGTTCACAGGAAATCATCAGTGGATTGTTTTGAACAATTTCATCAAAGACGCGTATCCACCAGAGGTATTAACCGAATTGCATTGCCAATTTTCAGCCGGAATGCAGACAGTGGCGGTTATTCCCGTGCTTCCCCATGGTGTTGTTCAACTCGGTTCTTTCTTGCCGATAATGGAGAATATCCCATTTGTGAATGATGTGAAGAACTTGATCTTTCAATTGGGACATGTTCCTGTTACTACCTCAAACTGCACTCCCTCAGTAGCTAACGGTTCTAACCAACCGAGTAATTCACCGCATGTTCCAATGCATGTCGCTGCTCAACCACTTTCTTTTCAAACGGGAGAAATAAATAGTTATCACAACAACGCTTCTGTATTGACACCTCAGTCCCAAAATCTAAACCAGATATTTGAAAGCTTTTGCCAACCAAAGGCTCAACGAGAGAATGCAACCGTGAAGGCTGAAGCTGAAGTGATATCTACAAATCTCGATTCTTCATGTCTGCAACAACGTTCTTTTTCATATAATGCAAGGTCCGCACTCAATATGGAACAAGTCTTATCAGGTATCGGGACGCAAAGTCATGGTAACGCTAATATGGATCCATCGTCAAGTGCCTTAAATATGTCTCGACGGCAAACCGATGGAGGCCAAATTTATTATCAGAATTCTAACAACACTTCACTTCTCGGAGGAATCCCAATATGTAGTAGTGCAATGAGTAATAATAATCTTCTAAGGAAAAATATGATTAATTGCTCGGTTTCAAATCCTTTGAAGTTATCAACTACTGATTTTTCCGGAACACAAAAAGTAGGGTTTGGAATCCAAAATGATAATTCAACTACATCAGCCAATCAGAAGATTCTCCCCATTGATTTAAAGTATGCTCAAAATGCTTCGGCTTCCACCGATGAAAGGATCGATGACTTGCTTCAGGCTCTGAAGATCCCATCATCTCTTCATCATAAGGAGCACGTGCCAATGAATGATCCTATCCCTGGTTTTCTTCATGATTTGGAACTTGAAGAAGTGTGTACGCAACTTTCATCTGGCGATGACGACTTGTTTGATGTCTTGGGCGTGGATTTCAAAAGGAATCTGCTGAACGGAAACTGGAATACATTGTTTGCCGATGAATCTGACGCCAATGCAGAAAATCTTGATAAAAAGGCGACGTCTACTAATTTTCCAGTTGTAGGTCATGATAATATTTATCCGGTAAATGAAGCGATATTAGGCAATGGCATCTTCTCTGGAACAAGCACCGGCCATCTCTTAGATGCCGTTATCTCAAAAACTCAACCTGCTTCAAATGAGAATTCCGACGAAATGTCTTGCAGGACTACAATAACAAGGATTAGTACCGCGTCCGTTCCTTCTACTGGCATTCAGATTATTCGCGACCGTGTTGGCCAGGGGGCGCTGTTTGATTTTCCCAAAGCGGAGATTAAAACTAGCGCAGTGGAAACAAGTTCTCTTAGGTCTGGTTGCAGCAAAGATAATGTTGGAAACTGTTCTCAAACCACTTCCATATACGGTTCTCAACTTAGTTCATGGGTGGAAAACGATAGCAGCAGCCATGTGAAACGTGAAGATAGTGTTTCAACCGGATACTCCAAGAGACCAGATGAAGTTAGCAAACCAAATCGTAAAAGGCTTAAACCTGGAGAGAACCCTAGGCCTCGACCTAAAGATCGTCAAATGATTCAAGATCGCGTGAAAGAGTTACGCGAAATTGTGCCCAATGGAGCAAAATGTAGCATAGATGCTCTTCTTGAAAGGACCATCAAACATATGCTTTTCTTGCAAAGTGTAACAAAGCACGCCGATAAGCTGAAACAGATGGGAGAATCCAAGATTCTTAGTAAAGAAGGTGGATTGTTATTAAAAGATAACTTCGAGGGAGGGGCTACATGGGCGTATGAGGTTGGTTCACAATCAATGGTTTGTCCTATCATAGTTGAGGATCTTAATCATCCCCGTCAGATGCTTGTCGAGATGCTTTGTGAGGAACAAGGTCTCTTTCTTGAAATAGCCGATTTAATCAAAGGATTAGGATTAACTATCCTAAAGGGCGTCATGGAAGCTCGCAATGACAAGATATGGGCATGCTTTTCTGTCGAGGCAAACAGGGATGTAACAAGGATGGAAATATTCATGTCACTAGTTCGACTTTTGGAACAAACAGCGAAAGGAGGCGCATCTTCATCAAATGCTGCCGTTGATAACAACATGATGGTTTATCATTCGATCCCGCAATCCACCTAG 2592 0.4201 MGFLLKEGLKSLCGRNQWCYAVFWKIGCNNSKLLIWEDCYYEPLPSRYFPQVAGTSNLPYRDREGCWFSSDSQLRVQEDDRVCSLINKMMVNNSVNVAGQGILGRAAFTGNHQWIVLNNFIKDAYPPEVLTELHCQFSAGMQTVAVIPVLPHGVVQLGSFLPIMENIPFVNDVKNLIFQLGHVPVTTSNCTPSVANGSNQPSNSPHVPMHVAAQPLSFQTGEINSYHNNASVLTPQSQNLNQIFESFCQPKAQRENATVKAEAEVISTNLDSSCLQQRSFSYNARSALNMEQVLSGIGTQSHGNANMDPSSSALNMSRRQTDGGQIYYQNSNNTSLLGGIPICSSAMSNNNLLRKNMINCSVSNPLKLSTTDFSGTQKVGFGIQNDNSTTSANQKILPIDLKYAQNASASTDERIDDLLQALKIPSSLHHKEHVPMNDPIPGFLHDLELEEVCTQLSSGDDDLFDVLGVDFKRNLLNGNWNTLFADESDANAENLDKKATSTNFPVVGHDNIYPVNEAILGNGIFSGTSTGHLLDAVISKTQPASNENSDEMSCRTTITRISTASVPSTGIQIIRDRVGQGALFDFPKAEIKTSAVETSSLRSGCSKDNVGNCSQTTSIYGSQLSSWVENDSSSHVKREDSVSTGYSKRPDEVSKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQMGESKILSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNHPRQMLVEMLCEEQGLFLEIADLIKGLGLTILKGVMEARNDKIWACFSVEANRDVTRMEIFMSLVRLLEQTAKGGASSSNAAVDNNMMVYHSIPQST 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00352 863 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 861 IPR043561 GO:0003700|GO:0006355
Vifa6g00352 863 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 176 IPR025610 -
Vifa6g00352 863 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 661 710 IPR011598 GO:0046983
Vifa6g00352 863 MobiDBLite consensus disorder prediction 632 676 - -
Vifa6g00352 863 CDD bHLH_AtLHW_like 665 734 - -
Vifa6g00352 863 MobiDBLite consensus disorder prediction 630 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00352 Vifa-Chr6 145732617 145736862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00352 450 844 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 50.627 3.33e-110 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00352 - - aprc:113857443 1151.73