Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00351 ATGGGAACGTACTTTCATGGACGTAGCAACGGTTCTGACATCCAACCGTCGGCAGAAGGTATGCAGACACTTTACCTTATGAATCCAAACTACGTAGTACCGTACTCTGAGGAAGCACAAAATCCAACACAAAACATGCTTTTCGCTAATCCCAACGCTACCACAAACACTCCTAGTTCGCCTCACGCGCTTAATGGTTTCAAATTTCCACACGCGCCTTCTTCATTCAGTCAACAAAACGTAGTTGGATTTACTGTTCCACAGTCGAACTTGCTTGGATCCAACTCCACCGACAGTTCGTCACAGCCTTATCAAGCTTCCGGCTTCCACGGCTTCGCCTCCTCGGCGTCCGAAGCTCCTCATCCTCCTCATCCTCCTCGTCCTCCTCATCCTCAGAATAACACTTGGGGATCAGGTAATTTTATATTACCTGATCAATCTGTCACGGTGGCGACAACATCTAACAGATCAGACTCAGACTGTGTTGATGTCGCCACCGTGATAACATCTGAAGCGACAGAGTTTTCGCCGCCGCAAATAGGTTATCATCATAGGCCAGTTTATCAGCGCGGCTTGTCTCTCAGTCTTTCTTCACAACAAACACCTCACCGGTCATTTTCTGGCGAGGTTGAGATATATCGTGGCAGTGACAACCGTGGCTGTGTTGTTTTCGGGTCGAAATATTTAAAAGTAGCACAAGAGCTTCTAGATGAAGTTGTGAATGTGGATAAGGGAATCATGAAAGGAGAATATGTTGAAGGAGAAAATACTAACAATAATGATAGAGAAAAGAGGAAAGCGAATATTGAATCGAGTCCAAATGGTGGAAGAGAAAACGATGGAGGGAAACAAGTTGTTGAATTAAGCACTGTACAGAGACAAGAACTTCAAATGAAGAAGTCGAAACTTGTTAACATGCTTGATGAGGTAGAACTAAGGTACAAACAATACCACCATCAAATGCAAAGTGTGATATCATCCTTTGAATCCGCAACAGGATACGGAGCAGCAAAATCTTACACATCCCTAGCCTTGAAGACAATATCAAAGCAATTTCGAAGTCTGAAAGACGCAATCGCATCGCAAATCAAGACAACTAGCAAGAGTTTGGGAGAAGATGATTGCTTGGGAGTTAAGTTAGAAGGTTCTAGGCTTAGGTATGTCGATCACCATCTCCGACAACAACGGGCATTACAGCAACTTGGAATGATTCAGAATAATAATGCTTGGAGACCACAGAGAGGATTGCCTGAACGAGCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAGCATTTCTTGCACCCATATCCTAAGGACTCTGATAAGGTTATGCTTGCAAGACAAACCGGACTTACTCGGAGTCAGAGGAACTTTCAAATTGACGTTCATTCTCGAGCATTGACATTAGTAGTTCTTCATTTGTGTTGTCCATAA 1434 0.4386 MGTYFHGRSNGSDIQPSAEGMQTLYLMNPNYVVPYSEEAQNPTQNMLFANPNATTNTPSSPHALNGFKFPHAPSSFSQQNVVGFTVPQSNLLGSNSTDSSSQPYQASGFHGFASSASEAPHPPHPPRPPHPQNNTWGSGNFILPDQSVTVATTSNRSDSDCVDVATVITSEATEFSPPQIGYHHRPVYQRGLSLSLSSQQTPHRSFSGEVEIYRGSDNRGCVVFGSKYLKVAQELLDEVVNVDKGIMKGEYVEGENTNNNDREKRKANIESSPNGGRENDGGKQVVELSTVQRQELQMKKSKLVNMLDEVELRYKQYHHQMQSVISSFESATGYGAAKSYTSLALKTISKQFRSLKDAIASQIKTTSKSLGEDDCLGVKLEGSRLRYVDHHLRQQRALQQLGMIQNNNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLARQTGLTRSQRNFQIDVHSRALTLVVLHLCCP 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00351 477 Gene3D - 389 461 - -
Vifa6g00351 477 MobiDBLite consensus disorder prediction 252 284 - -
Vifa6g00351 477 MobiDBLite consensus disorder prediction 252 271 - -
Vifa6g00351 477 Pfam Homeobox KN domain 427 455 IPR008422 GO:0003677|GO:0006355
Vifa6g00351 477 MobiDBLite consensus disorder prediction 93 112 - -
Vifa6g00351 477 SUPERFAMILY Homeodomain-like 403 455 IPR009057 -
Vifa6g00351 477 Coils Coil 293 313 - -
Vifa6g00351 477 SMART prehox3 217 361 IPR006563 -
Vifa6g00351 477 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 116 455 - -
Vifa6g00351 477 Pfam Associated with HOX 222 360 IPR006563 -
Vifa6g00351 477 MobiDBLite consensus disorder prediction 93 142 - -
Vifa6g00351 477 CDD homeodomain 410 455 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00351 Vifa-Chr6 143665487 143669407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00351 1 465 Homeobox Transcription Factor Family AT2G35940 44.711 4.08e-99 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00351 - - mtr:25492199 627.861