Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00349 ATGGATGTTGATTCTTCCATGGTGGCGGAGAACGATCACGGTTCAGCGGTGCAGAGCAATGAAGAGAGGGAACATATAGGGGAGACGCCATCGTCATCTTCTTCTGGCGGTGGATCTCCTGCGGAGCTACAACCACAGCAGCAAGGTGCGGCTGCAGCTGCTCAGGGGCAGCACAGTCCGGTTGTTGGTCCGAGGCTTGCTCCGAGTTATACAGTTGTGGATGCGATTTTGGAGAAGAAGGATGATGGACCGGGGCCGCGGTGTGGTCATACGTTGACGGCTGTGCCGGCGGTGGGTGAGGAGGGAACGCCCGGATACATTGGTCCGAGACTGATTTTATTCGGCGGTGCGACTGCACTTGAGGGGAATTCCGCTGGTTCAGGGACTCCTACTTCTGCAGGAAATGCCGGCATACGTTTAGCTGGTGCCACAGCTGACGTCCACTGTTATGATGTCTTGACTAATAAATGGTCTAGGATAACTCCCTTTGGAGAGCCTCCAACCCCAAGGGCTGCACACGTGGCCACTGCTGTGGGAACGATGGTAGTTATTCAGGGCGGCATTGGTCCTGCTGGATTGTCTGCGGAGGACCTTCATGTTCTTGATCTCACACAGCAACGACCAAGATGGCATAGAGTTGGTGTTCCAGGGCCTGGACCAGGGCCACGCTATGGACATGTTATGGCTTTGGTGGGGCAGAGGTATCTCATGGCAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTAGACACAGCTGCCAAGCCCTATGAATGGCGCAAATTGGAGCCAGAAGGAGAGGGTCCGCCTCCATGCATGTATGCAACGGCAAGTGCACGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGCGTTCCGTTGGCTAGTGCATATGGACTTGCTAAGCACAGAGATGGTCGTTGGGAATGGGCAATTGCCCCAGGTGTTTCACCATCTTCAAGATATCAGCATGCAGCGGTGTTTGTTAATGCAAGACTCCATGTGTCTGGCGGGGCTCTTGGTGGAGGACGGATGGTAGAAGATTCATCTAGTGTTGCAGTGTTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCCGTTGTTACCAGTCCAAGAACGGGTAGATACAGTGCTGATGCAGCTGGTGGAGATGCCTCTGTCGAGTTGGTCCGGCGTTGCAGGCATGCAGCTGCTGCTGTTGGTGACCTAATTTTTATTTATGGTGGTTTACGTGGTGGAGTCTTGCTGGATGACCTGCTTGTTGCTGAAGATCTTGCTGCTGCAGAAACAACAAGTGCTGCTTCGCATGCTGCTGCAGCAGCAGCTGCGTCTGATGTACAAATGGGACGAGTACCAGGAGGCTATGGATTTGTTGATGATAGAACAGGGCAAACAATGTCTGATGCGGCTCCTGACGGTGCAGTTGTTTTGGGAAATCCAGTTGCTCCCCCTGTAAACGGTGACATGTATACTGATATCAGCACTGAAAATGCATTGCTTCAGGGATCTAGGAGAACTAGCAAAGGAGTTGAGTATCTGGTTGAAGCATCTGCTGCAGAAGCTGAAGCTATCAGTGCCACACTGGCTGCTGCCAAGGCGCGGCAAGAGAATGGAGAAGTTGAATCACCAGATCGGGATCGTGGGGCTGAGGCTACTCCTAGTGGCAAACAAATATCTTCCATGATTAAGCTTGAATCTGCAAGCCCAAATAGTATTGCTTCTGGCGGAGTTAGGCTGCATCACAGAGCTGTGGTTATTGCCGCAGAGACTGGTGGTGCATTAGGTGGCATGGTTAGGCAGCTTTCGATTGATCAGTTTGAAAATGAAGGTAGACGGGTCAGTTATGGGACTCCAGAAAGTGCAACTGCTGCTAGAAAGTTATTAGATCGCCAGATGTCTATCAATAGTGTCCCAAAGAAGGTCATAGCACACCTCTTAAAGCCCCGTGGCTGGAAACCACCAGTTCGACGGCAGTTTTTCTTGGATTGCAATGAAATTGCAGATCTTTGTGATAGTGCAGAGAGGATATTTTCTAGCGAACCAACTGTCATACAACTTAAGGCACCAATTAAAATATTTGGTGATTTACATGGGCAGTTTGGGGATCTCATGCGCCTTTTTGATGAGTATGGTTCACCATCAACTGCCGGTGACATAGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATAGGGGCCAACACAGCCTGGAAACTATAAGCCTTCTGCTTGCTTTGAAGGTTGAGTATCCAAACAATGTTCACTTAATACGTGGAAATCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTTCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGATGGAATTTGGACATGGCACCGAATAAACCGTCTGTTTAACTGGCTTCCTCTTGCGGCTCTAATTGAGAAAAAAATCATTTGCATGCACGGGGGTATTGGCCGTTCAATAAATCACTTGGAACAAATTGAGAATATTCAGCGTCCTATTACAATGGAAGCAGGATCTATTGTGCTGATGGATCTTTTGTGGTCTGATCCTACAGAGAATGACAGCGTGGAAGGTCTACGACCAAATGCTAGAGGTCCAGGGTTAGTTACTTTTGGGCCTGACCGTGTCATGGAATTTTGCAATAACAATGATCTTCAGCTGATTGTTCGAGCACATGAATGTGTGATGGATGGCTTTGAGCGTTTTGCACAGGGACATTTAATCACCCTTTTCTCAGCTACAAATTACTGTGGTACCGCAAATAATGCTGGAGCAATATTAGTTTTGGGGAGGGATCTTGTGGTGGTTCCTAAACTGATTCATCCATTACCACCGGCACTTTCTTCACCAGAAACATCACCTGAACGTCAGATTGAAGATACTTGGATGCAGGAGTTGAATGCAAACAGACCACCAACTCCAACTAGAGGTCGTCCTCCAGGACCAAATGACCGTGGTTCGCTGGCTTGGATATAG 3006 0.488 MDVDSSMVAENDHGSAVQSNEEREHIGETPSSSSSGGGSPAELQPQQQGAAAAAQGQHSPVVGPRLAPSYTVVDAILEKKDDGPGPRCGHTLTAVPAVGEEGTPGYIGPRLILFGGATALEGNSAGSGTPTSAGNAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSSRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELVRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTSAASHAAAAAAASDVQMGRVPGGYGFVDDRTGQTMSDAAPDGAVVLGNPVAPPVNGDMYTDISTENALLQGSRRTSKGVEYLVEASAAEAEAISATLAAAKARQENGEVESPDRDRGAEATPSGKQISSMIKLESASPNSIASGGVRLHHRAVVIAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPTVIQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPALSSPETSPERQIEDTWMQELNANRPPTPTRGRPPGPNDRGSLAWI 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00349 1001 Pfam Calcineurin-like phosphoesterase 698 905 IPR004843 GO:0016787
Vifa6g00349 1001 SUPERFAMILY Metallo-dependent phosphatases 655 960 IPR029052 -
Vifa6g00349 1001 PIRSF STPPP_BSU1 38 1001 IPR012391 GO:0004721|GO:0009742
Vifa6g00349 1001 Pfam Galactose oxidase, central domain 222 275 - -
Vifa6g00349 1001 Pfam Kelch motif 329 374 IPR011498 GO:0005515
Vifa6g00349 1001 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1001 - -
Vifa6g00349 1001 MobiDBLite consensus disorder prediction 954 1001 - -
Vifa6g00349 1001 ProSitePatterns Serine/threonine specific protein phosphatases signature. 767 772 IPR006186 GO:0016787
Vifa6g00349 1001 MobiDBLite consensus disorder prediction 960 981 - -
Vifa6g00349 1001 MobiDBLite consensus disorder prediction 546 560 - -
Vifa6g00349 1001 SMART pp2a_7 670 954 IPR006186 GO:0016787
Vifa6g00349 1001 MobiDBLite consensus disorder prediction 1 65 - -
Vifa6g00349 1001 MobiDBLite consensus disorder prediction 543 567 - -
Vifa6g00349 1001 CDD MPP_Bsu1_C 650 952 IPR041758 -
Vifa6g00349 1001 Gene3D - 634 970 IPR029052 -
Vifa6g00349 1001 MobiDBLite consensus disorder prediction 29 54 - -
Vifa6g00349 1001 FunFam Serine/threonine-protein phosphatase 267 467 - -
Vifa6g00349 1001 Gene3D - 242 452 IPR015915 GO:0005515
Vifa6g00349 1001 FunFam Serine/threonine-protein phosphatase 66 263 - -
Vifa6g00349 1001 PRINTS Serine/threonine phosphatase family signature 834 861 IPR006186 GO:0016787
Vifa6g00349 1001 PRINTS Serine/threonine phosphatase family signature 733 760 IPR006186 GO:0016787
Vifa6g00349 1001 PRINTS Serine/threonine phosphatase family signature 804 830 IPR006186 GO:0016787
Vifa6g00349 1001 PRINTS Serine/threonine phosphatase family signature 894 914 IPR006186 GO:0016787
Vifa6g00349 1001 PRINTS Serine/threonine phosphatase family signature 698 725 IPR006186 GO:0016787
Vifa6g00349 1001 PRINTS Serine/threonine phosphatase family signature 766 790 IPR006186 GO:0016787
Vifa6g00349 1001 PRINTS Serine/threonine phosphatase family signature 916 932 IPR006186 GO:0016787
Vifa6g00349 1001 Gene3D - 65 241 IPR015915 GO:0005515
Vifa6g00349 1001 FunFam Serine/threonine-protein phosphatase 634 974 - -
Vifa6g00349 1001 SUPERFAMILY Kelch motif 142 431 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00349 Vifa-Chr6 141965785 141982634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00349 662 897 Calmodulin-binding Proteins AT5G63870 29.412 1.49e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00349 - - gmx:100788485 1725.29