Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00341 ATGGATGAAATTGAAATTCCTCCATATTTTCTATGTCCAATTTCATTTCAAATCATGAAAGATCCTGTAACAACAGTAACAGGCATAACATACGACAGACAAAGCATAGAAAAATGGTTACTTACGGCCAAGATTTGTGTTTGTCCTGTAACAAACCAAGCACTACCTAGAAGCAAAGAGTTTTTGACTCCAAATCATACACTTCAAAGGCTAATCAAAGCATGGATTTCGTCAAATGAAGCCAAAGATGTTGATGATCAAGTTCCATCTCCGAAATATTCTCTCAATAGAATCCATCTTCAGAAGCTTGTTAAGAATCTTGAGGTTCCTAGTTGCTTTCGGATCGCAATGGAGAAGATTCATGATCTTGCTAAACAAAGTGAGAGAAATAGAACGTGCATGGTTGAAGTAGGTGTAACCAAGGCTATGGTTATGGTGATTAGGAAGAGTTTCAAACAAGGTAACACTATTTGTTTAGAAGAAGGTTTGAAAACTATTAGTCTTTTGTGGCATGAAGCGATGGTTAAGAACATGATCAAGCCTTTGGTTGGAGGAAACATGGAGTTCATGAACTCTTTGGCTTGGATTTTGAAAATTTACATTGATAACAACGATGTGAAAATGGTAAATGAAGTTATGACATTAACGAAGTTGACAATTGACATTGTAGATTCATCTCTTATAGGAAATTTAAACATTGAATTCTTTAGACAAATTATGAGAGTACTTCAAAAACGGAGATTATTCTCTAAACAAACGATTAAATCAGCGTTACATGTTCTTATTAGCACATCCTCGTTAGGTAGAAACCGAACGAGGATTGTGGAAGCTGGTGGAGTAAGTGAACTCATTGAAATCGAGCTTGAAAACCCGAAGAAGAGCGTGACCGAGCTTATATTCAACCTTTTGGCACATTTGTGTTTATGCGCGGAAGGAAGAGAACAATTTTTGAGGCATGCGGCGGGTATAGCGATGCTTACTAAAAGGATTTTGAGGGTTTCGGCAGCAACCGATGACCTAGCGATTCAAGTAATTTCAGTGATTGCGAAGTATGCATCTTCTAGAGATATTTTAGAGATGTTGAGGGTAGGAGCGGTTTCAAAGCTTTGCATGGTAATGCAGGCAGATTGTGCTTCTTATTTGAAAGAGAAAGCAAGAGACATACTTAGGTTACACTCCACTTCATGGAATAATTCTCCTTGTATACAAGTGTATTTTTTAACTAGGAACCAAAGGTGA 1239 0.3729 MDEIEIPPYFLCPISFQIMKDPVTTVTGITYDRQSIEKWLLTAKICVCPVTNQALPRSKEFLTPNHTLQRLIKAWISSNEAKDVDDQVPSPKYSLNRIHLQKLVKNLEVPSCFRIAMEKIHDLAKQSERNRTCMVEVGVTKAMVMVIRKSFKQGNTICLEEGLKTISLLWHEAMVKNMIKPLVGGNMEFMNSLAWILKIYIDNNDVKMVNEVMTLTKLTIDIVDSSLIGNLNIEFFRQIMRVLQKRRLFSKQTIKSALHVLISTSSLGRNRTRIVEAGGVSELIEIELENPKKSVTELIFNLLAHLCLCAEGREQFLRHAAGIAMLTKRILRVSAATDDLAIQVISVIAKYASSRDILEMLRVGAVSKLCMVMQADCASYLKEKARDILRLHSTSWNNSPCIQVYFLTRNQR 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00341 412 SUPERFAMILY RING/U-box 3 81 - -
Vifa6g00341 412 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Vifa6g00341 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Vifa6g00341 412 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vifa6g00341 412 Gene3D - 100 399 IPR011989 -
Vifa6g00341 412 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vifa6g00341 412 SUPERFAMILY ARM repeat 109 398 IPR016024 -
Vifa6g00341 412 PANTHER WDSAM1 PROTEIN 3 403 IPR045185 GO:0061630
Vifa6g00341 412 CDD RING-Ubox_PUB 7 58 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00341 Vifa-Chr6 139812664 139813902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00341 2 409 U-box Gene Family AT3G11840 36.283 2.68e-82 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00341 - - gmx:100811293 531.561