Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00340 ATGTCGAAGAACACTTCCTTTCAAGACGACGTGCCATGGCGAGTTTCATCATCTTCACTGAAACCATTACCCAAAATTCACCACTCTCCTATTCTTCGCGTTTCTCACACACCTCTCTCCGATTATGCAATTTCCATCATGAGGCATCCAGACCCTATAGGGAATGGTTTGGGTGATGGAGCTATAGTGGAAGCAGCTGGTCCTGAATGCTTAGTACCTGGTCAAAGTGCTCCCATTAAACTACTTGGTCTCAAGGTCTGGCCTATAGAAGTTGACTTGAAATTTTTGGAACCCGTCGGGCGAGAACTTAAGGCGCTTGGGAAGGATGCTGAGGGAATTTCAGATGCTGAAGTTGTTCTCATGTCAGAAGAAGTTGTTTCTCATGCCCTTGAAACCATTATTGAAGAAGAACATGTTGCACCAAAAGTTGAAAAAGTTAATGACACAGATACATCTAGCCATTATGGTCTAGATTCAGGATTCTACATGTCATCTTTTACAGCAACAATTTTCGTTGTTTCCCTTGTCACTCTTGGAGTTTTACTTATTACTTTGCTGGTTTCTTTGGTGATTATGCTGCAATCATGTCAAAGTAAAAGTACTGGAGTTATTGAACTTGTGAATATGAATAATTACTACAGTTATTGCAGGGTGTATTCTCTGCATGCTGAGATCAATAGGTTAGAGAGATATGATCTTCCAAACATATGTAGAGATCTGACTATACATTATATCAAAGGAGGGCATTATGCCAAAGAGTTGAATTTAATTGTGTCTATGATCGATGATTACTTCAAGAATCTGAGACCTTCAGACAATGGTTTGGATGTGGTGTTGTTGGATATAGATGATATTGTTCCTCCAAATTCGTATCAGAGGTTTCATAGGGACGGCATTAGCAACTGTGTCAAAGAGGCAAAACATGTAAAGCTCATGTTTGTTTTAAGATTATACATGAACCTTCAAACTGATGGGTGGCCTATAATTTTGGTATCAAGAGAACCTGAAACGTACCAAAATGTCACCATTAATCATCTTGTTTCTGCAGGATTTAGAGGTTGGTCTTCCTTGATGATGAGAACAGAAGATTCAGAGTCTACTAAAGGAAATGAGTACTTTTCTAGACGTCTGCTTTCGTATCCATCAGGTCATTTCTTCCCTGCAGCTGATCAGGTCGGGCAAGTTAAGTGTGGGAGTTGTACGCTATTGCTAATGTATCCATATGGCGCTTCACAGGTCAGGTGTTCATCATGCCGGTTTGTGACAGAAATCGGGACAACTGATGTGGATACTACAGGTTGGATACACACCAAGTGTGGCTTTCCAAGCATGGAAGAAAGCATATTAGATCAGTTGAATGAAGAGTTGAAAGAGAAAATAAAGAATGATGTTTATGACATGGCTCCTTGGAAATCTCCAAGTCCAGATGGATACCGTGTAGGCTTTTATCAAAACTCTTGA 1461 0.4018 MSKNTSFQDDVPWRVSSSSLKPLPKIHHSPILRVSHTPLSDYAISIMRHPDPIGNGLGDGAIVEAAGPECLVPGQSAPIKLLGLKVWPIEVDLKFLEPVGRELKALGKDAEGISDAEVVLMSEEVVSHALETIIEEEHVAPKVEKVNDTDTSSHYGLDSGFYMSSFTATIFVVSLVTLGVLLITLLVSLVIMLQSCQSKSTGVIELVNMNNYYSYCRVYSLHAEINRLERYDLPNICRDLTIHYIKGGHYAKELNLIVSMIDDYFKNLRPSDNGLDVVLLDIDDIVPPNSYQRFHRDGISNCVKEAKHVKLMFVLRLYMNLQTDGWPIILVSREPETYQNVTINHLVSAGFRGWSSLMMRTEDSESTKGNEYFSRRLLSYPSGHFFPAADQVGQVKCGSCTLLLMYPYGASQVRCSSCRFVTEIGTTDVDTTGWIHTKCGFPSMEESILDQLNEELKEKIKNDVYDMAPWKSPSPDGYRVGFYQNS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00340 486 PANTHER EXPRESSED PROTEIN 4 110 - -
Vifa6g00340 486 NCBIfam zinc finger domain, LSD1 subclass 394 422 IPR005735 -
Vifa6g00340 486 Pfam HAD superfamily, subfamily IIIB (Acid phosphatase) 208 367 IPR005519 -
Vifa6g00340 486 Gene3D - 211 379 IPR023214 -
Vifa6g00340 486 Pfam LSD1 zinc finger 397 421 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00340 Vifa-Chr6 139549437 139554312 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vifa6g00340 Acid_phosphat_B 3.6e-11 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00340 - - gmx:100798657 317.775