Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00336 ATGGGTGTACCGGGGAAGTGGATTAGAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCGCGAGTCTTCAGAGAAGGATGGAAATGCTAGCAAATTTCGCCATCGAAGAAAGCATTCCATCGAAATTGACAGTAGCAAACTTCAAAATGAGTTTGGTGATGGTGGCGCTACTCCTATTGGAGATGCAGATCACACAAATCCCCAATCAAACCTTGATGCTCATTATTCTCCTTCTACTTCACAACAAGCACCGGATGTTGCACATAATCCTCAAATCACTAGTGAAGAATGGGCCGCAATATGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGTGCTTTGAAAGGATTGGTAAGGCTTCAGGCCCTTGTGAGAGGCCATGCAGTAAGAAAACAGGCTGCAATAACTCTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTAGGGCAAGGCGTGTTCGCTTGGCATTGGAAAGTCAAACAGATCAACAGAAACTTCAGCAACAGCTCGTAAACGAAGCCCGTGTTAGAGAAATTGAAGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAAACCAAAATATTAAAGAGACAAGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGGCAGCCTGCTGCTTCTTCGGGGTTTGAACCCGATAAAAGTAGTTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTGCGTCCTTGGGAGAATCGCTTTCTTGACATTAATACGAAAGATGGAGTAAAGGTAGACGAAAATGATGTTATGGATGGTAGTAGCAATGGAATCAGACCTCAGTTCAAGCCTACTAATGCGAAATCGAATCTGCCAAACATCCATCCAAGCGTTGTCAGTCACAAAACCGGCCTTTCTCTCTCTGATGGCTGCGAGTCTTCTTCCACTAGCAAGTCAGCAGAAAACAACACAAAATCTGGTTTTCCAAGATCCCAAAGTAATCCAAAGGAGAGAAACTCACAGGTAGATAAAGATAAACAGGCGAAAAAGCGGTTATCTCTTCCTAACAACGGGATTGGTCCCGGGGCTCAAACGACCAGATATCCTACTAGAACTAATGTGAAAGGGACACGTAGCACACAAAAGCCTATAAGGAATAAACCTAAGCTCAATGAAGAAGAATCTTACTAA 1218 0.4458 MGVPGKWIRALVGLKKSEKRESSEKDGNASKFRHRRKHSIEIDSSKLQNEFGDGGATPIGDADHTNPQSNLDAHYSPSTSQQAPDVAHNPQITSEEWAAICIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTDQQKLQQQLVNEARVREIEEGWCDSVGSVEEIQTKILKRQEAAAKRERAMAYALAHQWQAGSRQPAASSGFEPDKSSWGWNWLERWMAVRPWENRFLDINTKDGVKVDENDVMDGSSNGIRPQFKPTNAKSNLPNIHPSVVSHKTGLSLSDGCESSSTSKSAENNTKSGFPRSQSNPKERNSQVDKDKQAKKRLSLPNNGIGPGAQTTRYPTRTNVKGTRSTQKPIRNKPKLNEEESY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00336 405 FunFam IQ-domain 11 94 145 - -
Vifa6g00336 405 PANTHER IQ-DOMAIN 5-RELATED 1 370 - -
Vifa6g00336 405 MobiDBLite consensus disorder prediction 62 86 - -
Vifa6g00336 405 ProSiteProfiles IQ motif profile. 119 146 IPR000048 GO:0005515
Vifa6g00336 405 MobiDBLite consensus disorder prediction 367 393 - -
Vifa6g00336 405 Gene3D - 96 137 - -
Vifa6g00336 405 MobiDBLite consensus disorder prediction 15 44 - -
Vifa6g00336 405 MobiDBLite consensus disorder prediction 283 345 - -
Vifa6g00336 405 MobiDBLite consensus disorder prediction 15 86 - -
Vifa6g00336 405 ProSiteProfiles IQ motif profile. 95 123 IPR000048 GO:0005515
Vifa6g00336 405 MobiDBLite consensus disorder prediction 274 405 - -
Vifa6g00336 405 MobiDBLite consensus disorder prediction 346 360 - -
Vifa6g00336 405 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00336 Vifa-Chr6 138379115 138383103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00336 1 376 IQD Protein Family AT3G22190 57.855 6.60e-115 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00336 - - tpra:123923158 606.29