Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00335 ATGTTTGGGAGAGCACCGAAGAAAAGTGATAGTACGAGGTACTATGAAATCCTGGGTGTTTCTAAGAGCGCGTCTCAGGATGATTTGAAAAAAGCTTACAAAAAAGCTGCGATTAAGAATCATCCTGATAAAGGTGGTGATCCCGAGAAGTTCAAAGAGCTTGCACAAGCTTATGATGTTCTGAGTGATCCTGAGAAGCGTGAGATATATGATACATATGGTGAGGATGCTCTTAAGGAAGGAATGGGTGGTGGTGGTGCTGGTGGCGGCCATGACCCATTTGACATCTTCTCGTCTTTCTTTGGCGGTGGTGGAGGTGGTAGTAGCCGTGGACGGAGGCAGAGACGTGGAGAAGATGTTGTTCACCCTCTCAAGGTCTCTTTGGAGGATCTTTATCTCGGAACATCTAAGAAGCTTTCTCTCTCGAGGAATGTCTTGTGCTCAAAGTGCAGTGGCAAAGGTTCTAAATCTGGGGCTTCCCTGAAATGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATTAGGCATCTCGGTCCATCAATGATTCAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACTGGTGAGACTATCAATGATAAAGATCGCTGCCCACAGTGTAAGGGAGAGAAGGTTGTACAAGAAAAGAAAGTACTTGAAGTTCACGTGGAGAAGGGCATGCAGAACAGCCAGAAGATTACATTCCCTGGCGAAGCTGATGAAGCACCAGACACAGTTACTGGGGATATCGTTTTCGTGCTTCAGCAGAAAGAACATCCCAAGTTCAAAAGAAAGGGTGAAGACCTTTTTGTAGAGCACACATTGTCTCTTACTGAGGCTTTATGTGGTTTCCAGTTTGTGCTTACTCACTTGGATGGTCGCCAACTCCTTATCAAATCAAACCCTGGAGAAGTTGTCAAGCCTGATTCATTCAAGGCTATTAATGATGAGGGAATGCCATTGTACCAGAGGCCCCCCTTTATGAAGGGCAAGCTTTACATTCACTTCACTGTGGAGTTCCCCGAGACTCTAAGTCCGGATCAGGTGAAGGGTTTGGAGGCTGTTCTTCCAGCTAAACCCTCATCACAGTTGACAGACATGGAGCTCGATGAGTGCGAGGAGACTACACTTCATGATGTCAATATGGAAGAGGAAACAAGGAGGAAGCAGCAGCAACAACAGGAGGCATATGATGAAGATGATGATATGCCTGGTGGGGCACAGAGGGTACAGTGCGCCCAGCAGTAG 1254 0.4649 MFGRAPKKSDSTRYYEILGVSKSASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYDVLSDPEKREIYDTYGEDALKEGMGGGGAGGGHDPFDIFSSFFGGGGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCSGKGSKSGASLKCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVVQEKKVLEVHVEKGMQNSQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSFKAINDEGMPLYQRPPFMKGKLYIHFTVEFPETLSPDQVKGLEAVLPAKPSSQLTDMELDECEETTLHDVNMEEETRRKQQQQQEAYDEDDDMPGGAQRVQCAQQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00335 417 CDD DnaJ 14 63 IPR001623 -
Vifa6g00335 417 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 399 IPR044713 GO:0006457|GO:0030544
Vifa6g00335 417 ProSiteProfiles Zinc finger CR-type profile. 134 218 IPR001305 GO:0031072|GO:0051082
Vifa6g00335 417 MobiDBLite consensus disorder prediction 378 398 - -
Vifa6g00335 417 CDD DnaJ_C 118 346 - -
Vifa6g00335 417 Pfam DnaJ domain 14 71 IPR001623 -
Vifa6g00335 417 Pfam DnaJ C terminal domain 121 343 IPR002939 -
Vifa6g00335 417 CDD DnaJ_zf 147 213 IPR001305 GO:0031072|GO:0051082
Vifa6g00335 417 FunFam Chaperone protein DNAj, putative 10 110 - -
Vifa6g00335 417 Gene3D - 111 259 - -
Vifa6g00335 417 SMART dnaj_3 12 66 IPR001623 -
Vifa6g00335 417 Gene3D DnaJ domain 10 110 IPR036869 -
Vifa6g00335 417 Gene3D - 263 344 - -
Vifa6g00335 417 Hamap Chaperone protein DnaJ [dnaJ]. 10 369 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vifa6g00335 417 FunFam Chaperone protein dnaJ 3 214 254 - -
Vifa6g00335 417 FunFam DnaJ subfamily A member 2 261 344 - -
Vifa6g00335 417 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vifa6g00335 417 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 144 216 IPR036410 -
Vifa6g00335 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 118 262 IPR008971 GO:0006457|GO:0051082
Vifa6g00335 417 Pfam DnaJ central domain 147 213 IPR001305 GO:0031072|GO:0051082
Vifa6g00335 417 SUPERFAMILY Chaperone J-domain 8 109 IPR036869 -
Vifa6g00335 417 Gene3D - 147 213 - -
Vifa6g00335 417 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vifa6g00335 417 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vifa6g00335 417 PRINTS DnaJ domain signature 15 33 IPR001623 -
Vifa6g00335 417 FunFam DnaJ subfamily A member 2 147 213 - -
Vifa6g00335 417 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Vifa6g00335 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 352 IPR008971 GO:0006457|GO:0051082
Vifa6g00335 417 MobiDBLite consensus disorder prediction 378 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00335 Vifa-Chr6 137951701 137954193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00335 14 73 C2H2 Transcription Factor Family AT1G74250 42.029 1.59e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00335 K09503 - gmx:547558 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00335 6 137951701 137954193 Vifa6g00335 6 137951701 137954193 ECH