Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00331 ATGTTTCAGTCAAACCTTTTGGAAGCTGGTCAGTTCCATCCATTAGAGATGATGCAAAACACTTCTGAAAGCGATGTTCCACGAATTCGTGAAGATGAATGCTTCGAAAGTGCCACAAAGTCCTACAGTGAGAATCATGAAGGTGGTGCTGCTTCTGGTGAAGAACAAGAACCACGTCCCAAAAGAAAACGTTACCACCGCCACACTCAGCACCAGATCCAAGAAATGGAATCTTTTTTCAAGGAGTGTCCACACCCGGATGACAAACAAAGGAAGGAGCTGAGTAGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAAAACAAACGAACTCAGATGAAGACACAACATGAACGTTCAGAGAACTCACAGCTTAGAGCAGAAAATGAGAAGCTTAGGGCAGATAATATGAGGTATAGGGAAGCTCTTAGCAATGCTTCATGCCCTAATTGTGGTGGTCCTACAGCTATAGGTGAAATGTCATTTGATGAACATCATTTGAGGCTTGAAAATGCAAGGCTACGAGAAGAGATTGATAGGATTTCAGCAATTGCAGCGAAATATGTAGGAAAACCGGTGGTAAACTATTCGAACATTTCACCATCTCTTCCACCGCGTCCATTAGAAATTGGTTTTGGTAACCAACAAGGGATTGGTACCATGGACATGTATGGTGGGAGTGGAGATCTTCTAAGGACATTAAGTGGACCCACTGCAGCAGACAAACCAATAATAATAGAATTAGCTGTTGCAGCCATGGAAGAACTCACTGGTATGGCACAAATAGGTGAACCTCTTTGGTTAAGTACTGCACTTGATGGAGCTGCCACGGTTCTTAATGAAGATGAATATGTTAGGTCATTTCCTCGCGGAATTGGACCAAAGCCTAATGGATTTAAATGTGAAGCTTCTAGAGAAACTAGTGTTGTTATCATGAATCATGTCAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCGACGGTGTTTGCTGGTATTGTTTCAAGAGCTATGACTGTGGAAGTGTTGTCAACTGGTGTGGCAGGAAACTACAATGGTGCTTTACAAGTGATGACAGCAGAATTTCAAGTACCTTCACCTCTGGTGCCAACTCGCGAGAGTTATTTTGTTAGGTATTGTAAACAACTTACCGATGGGACATGGGCAGTTGTGGATGTTTCTTTGGATAATCTGCGCCCTAGTCCTTCATCTAGATGCAGAAGAAGGCCTTCTGGTTGCTTAATTCAAGAGATGCCTAATGGCTACTCCAAGGTGACATGGGTTGAGCATGTAGAAGTGGATGACAGAGGTGTTCATAATCTATACAAGCAACTTGTTAGCACTGGACATGCATTTGGCGCGAAACGCTGGGTTGCAACATTAGATCGACAATGTGAAAGGCTCGCTAGCTCGATGGCAACAAACATTCCCACAGTTGATGTTGGCGTTATAACGAACCAAGAAGGGAGAAAGAGTATGCTGAAACTTGCAGAGAGAATGGTGATAAGTTTTTGTGGTGGAGTGAGTGCTTCAACAGCACACACATGGACAACACTATCTGGAACAGGAGCTGATGATGTGCGAGTGATGACACGTAAGAGTGTCGATGATCCTGGAAGACCTCCCGGAATTGTTCTTAGTGCTGCTACTTCCTTTTGGCTTCCAGTTCCACCTAAACAAGTTTTTGATTTCCTTCGCGACGAGAACTCAAGAAATGAGTGGGATATTCTTTCCAATGGCGGAGCAGTCCAAGAAATGGCACACATTGCTAACGGAAGAGAAACTGGAAACTGTGTCTCTCTACTAAGAGTAAATAGCGCGAATTCAAGCCAAAGCAACATGCTAATATTACAAGAGAGTGTAACAGATTCAACAGGCTCATTTGTTATCTATGCACCAGTAGATATCGTTGCTATGAATGTAGTTCTAAACGGAGGAGATCCAGATTATGTCGCACTTCTTCCATCAGGATTCGCTATACTTTCTGATGGAAATGGAAGTGATGAATCTGGAGCACAAGCTGGCGATGGTGGATCTCTTTTGACGGTTGCGTTTCAAATATTGGTTGATTCTGTTCCGACTGCTAAACTTTCGCTCGGATCTGTTGCTACGGTTAATAGTCTTATTACTTGTACTGTTGACAGAATCAAAGCTTCTTTATCTGGTGAAGCTGCTTAA 2190 0.4301 MFQSNLLEAGQFHPLEMMQNTSESDVPRIREDECFESATKSYSENHEGGAASGEEQEPRPKRKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERSENSQLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPSLPPRPLEIGFGNQQGIGTMDMYGGSGDLLRTLSGPTAADKPIIIELAVAAMEELTGMAQIGEPLWLSTALDGAATVLNEDEYVRSFPRGIGPKPNGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFAGIVSRAMTVEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQLTDGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSTGHAFGAKRWVATLDRQCERLASSMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCGGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKQVFDFLRDENSRNEWDILSNGGAVQEMAHIANGRETGNCVSLLRVNSANSSQSNMLILQESVTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILSDGNGSDESGAQAGDGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLITCTVDRIKASLSGEAA 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00331 729 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Vifa6g00331 729 CDD homeodomain 61 120 IPR001356 GO:0003677
Vifa6g00331 729 FunFam Homeobox-leucine zipper protein HDG1 48 135 - -
Vifa6g00331 729 Pfam START domain 251 471 IPR002913 GO:0008289
Vifa6g00331 729 SUPERFAMILY Homeodomain-like 53 119 IPR009057 -
Vifa6g00331 729 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Vifa6g00331 729 SUPERFAMILY Bet v1-like 243 473 - -
Vifa6g00331 729 Gene3D - 49 136 - -
Vifa6g00331 729 MobiDBLite consensus disorder prediction 1 71 - -
Vifa6g00331 729 Gene3D - 290 468 IPR023393 -
Vifa6g00331 729 SMART START_1 250 471 IPR002913 GO:0008289
Vifa6g00331 729 FunFam Homeobox-leucine zipper protein GLABRA 2 250 470 - -
Vifa6g00331 729 CDD START_ArGLABRA2_like 245 470 - -
Vifa6g00331 729 MobiDBLite consensus disorder prediction 25 40 - -
Vifa6g00331 729 SMART HOX_1 60 123 IPR001356 GO:0003677
Vifa6g00331 729 ProSiteProfiles START domain profile. 241 474 IPR002913 GO:0008289
Vifa6g00331 729 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 61 724 IPR042160 -
Vifa6g00331 729 SUPERFAMILY Bet v1-like 490 721 - -
Vifa6g00331 729 Coils Coil 118 145 - -
Vifa6g00331 729 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00331 Vifa-Chr6 136600386 136604110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00331 1 729 Homeobox Transcription Factor Family AT1G05230 77.310 0.0 1142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa6g00331 START 1e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00331 K09338 - gmx:100782260 1263.44