Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00325 ATGGCGATTCAAAACGAACCGGCGAAGGTCAGGTGGGGAGAATTGGAAGAAGACGACGGCGAAGATCTCGATTTTCTGTTACCTCCACGCCAGATCATAGGTCCTGACGAAAACGGAATCAAGAAGGTTATCGAGTACCAGTTCGACGATGATGGTAATAAGGAAGATGTTGGTGCTCGCCTCACTATGGTCTCTACTGAAGAAATCGTTCTCGAACGCCCCAAACCTCTTGGTTCCAGCAAGGAGGATGCGAATATTGATCCACTGGCTTCTTTCAACAAAGGTGCTGTTCTTATGATGGTGCTGCGGCTCCCTGCTGGTTCGACTAAGGGTACATATGTACCTCCTAGCCTGAGAGAAGGTGCTTCAAGGACACAAGGGTCAGACATGAGGCGGAGGAACGATGAGAATTCTGTTCGGGTAACCAACCTCTCGGAGGACACAAGGGAGCCTGATTTGATGGAGCTTTTCAGGCCTTTTGGTGCTGTGAGCAGGGTCTATGTTGCTATAGATCAAAAGACTGGCATGAGTAGAGGCTTTGGCTTTGTTAACTTTGTCAGCAGGGAAGATGCTCAGCGGGCTATCAACAAACTCAATGGATATGGCTACGATAATCTCATTCTTAGAGTTGAATGGGCCACCCCTAGAACAACCTAA 657 0.484 MAIQNEPAKVRWGELEEDDGEDLDFLLPPRQIIGPDENGIKKVIEYQFDDDGNKEDVGARLTMVSTEEIVLERPKPLGSSKEDANIDPLASFNKGAVLMMVLRLPAGSTKGTYVPPSLREGASRTQGSDMRRRNDENSVRVTNLSEDTREPDLMELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTT 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00325 218 CDD RRM_eIF3G_like 138 213 IPR034240 -
Vifa6g00325 218 SMART rrm1_1 138 211 IPR000504 GO:0003723
Vifa6g00325 218 FunFam Eukaryotic translation initiation factor 3 subunit G 103 218 - -
Vifa6g00325 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Vifa6g00325 218 PIRSF Transl_init_eIF-3_RNA-bind 1 73 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vifa6g00325 218 PIRSF Transl_init_eIF-3_RNA-bind 103 218 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vifa6g00325 218 Gene3D - 107 218 IPR012677 -
Vifa6g00325 218 SUPERFAMILY RNA-binding domain, RBD 124 217 IPR035979 GO:0003676
Vifa6g00325 218 MobiDBLite consensus disorder prediction 112 137 - -
Vifa6g00325 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 205 IPR000504 GO:0003723
Vifa6g00325 218 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 108 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00325 Vifa-Chr6 132477171 132478688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00325 4 218 Eukaryotic Initiation Factors Gene Family AT3G11400 49.686 5.84e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00325 K03248 - gmx:100818725 329.331