Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00308 ATGTCAAGAGCCAAAGAGGTTGTTATTACATGCAAAGCTGCAATATGCTGGGGTGTAGGAAAGGGAGTGACAGTGGAAGATATACAAGTAGATCCACCAAAGGCAACAGAAGTTCGAGTCAAGATGTTGTGCTCTAGTGTCTGCCATACAGACATCTCAAGCCTTCAAGGATTCCCACATAATCAATTTCCTCTAGCACTTGGCCACGAAGGAATCGGTGTAGTAGAGAGTGTCGGTGATGAAATAACAAATCTAAAGGAAGGGGATTTCATAATTCCAACATACGTAGGAGAGTGTGAAGAATGTGAGAATTGTGTTTCAGGGAAAACCAATTTGTGTTTGACACATCCGGTAAGATTAAACGGTCTAATGCCGGATAACACATCGAGGCTGTCGGTACAAGGCCAAAGACTGTATCATGTTTTGAGCTGTGCTACATGGTCGGAGTACGTGGTCGTTGATGTCAACTACCTTCTCAAAGTCGATCCAGCCATTAATTTAGCTCATGCTAGTTTCATCTCATGTGGTTTTTCAACCGGCTATGGAGCATGTTGGAAGGAAGCCGTTGTCGAAACTGGTTCAACTGTAGCTGTTTTTGGTCTCGGCGCTGTTGGATTAGGGGCCATAAGTGGGGCTAAGATGATGGGAGCAAGTAAGATAATTGGAGTTGACAAAAATGAGATGAAGAAAGAAAAAGGAGAGGCTTTCGGAATGACGCACTTTATAAATACTAATGATTCCAATAAATCTGCTTCTGATTTGGTTAAAGAGTTAACCGGAATCGGTGTAGATTACTGTATTGAATGTACTGGTGTTGCATCTATGTTTACTGAATCTGTAGAAGCCACAAAAATGGGAACAGGTAAAACAATTGCGGTTGGTATAACAGCTGAGCTTGTTGTGCCGTTTGGACTTCTCGCCATTGTGTTTGGTAGAACCATAAAAGGTTCTGTTTTTGGAGGTTTAAAAGCTAAATCCGATCTTTCTGTCATTGCTCACAAATGTCAAAAACAGGAACTTCCTCTTGAAAAACTTTTCACACACGAGGTTCCTTTGGTCGATATAAACAAAGCATTTGAGTTACTGAAACAACTTGATTGTGTGAAAGTTGTTATCAAGATGTAA 1125 0.4107 MSRAKEVVITCKAAICWGVGKGVTVEDIQVDPPKATEVRVKMLCSSVCHTDISSLQGFPHNQFPLALGHEGIGVVESVGDEITNLKEGDFIIPTYVGECEECENCVSGKTNLCLTHPVRLNGLMPDNTSRLSVQGQRLYHVLSCATWSEYVVVDVNYLLKVDPAINLAHASFISCGFSTGYGACWKEAVVETGSTVAVFGLGAVGLGAISGAKMMGASKIIGVDKNEMKKEKGEAFGMTHFINTNDSNKSASDLVKELTGIGVDYCIECTGVASMFTESVEATKMGTGKTIAVGITAELVVPFGLLAIVFGRTIKGSVFGGLKAKSDLSVIAHKCQKQELPLEKLFTHEVPLVDINKAFELLKQLDCVKVVIKM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00308 374 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Vifa6g00308 374 FunFam S-(hydroxymethyl)glutathione dehydrogenase 180 317 - -
Vifa6g00308 374 FunFam alcohol dehydrogenase 1-like isoform X1 19 179 - -
Vifa6g00308 374 PANTHER ALCOHOL DEHYDROGENASE 8 366 - -
Vifa6g00308 374 CDD liver_alcohol_DH_like 9 373 - -
Vifa6g00308 374 Pfam Alcohol dehydrogenase GroES-like domain 36 161 IPR013154 -
Vifa6g00308 374 Pfam Zinc-binding dehydrogenase 203 322 IPR013149 -
Vifa6g00308 374 Gene3D - 180 317 - -
Vifa6g00308 374 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 328 IPR036291 -
Vifa6g00308 374 Gene3D - 14 369 - -
Vifa6g00308 374 SUPERFAMILY GroES-like 7 188 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00308 Vifa-Chr6 128304585 128306205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00308 36 366 Monolignol Biosynthesis Gene Families AT2G21730 25.816 6.47e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00308 K00121 - gmx:100798341 595.119