Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00300 ATGTTTATTCAAATATCAATGATGTTTCTTTTAGTATTGTTTATGAGTTGTTTTTCTCTTGGGGGAGCCATAGATTGTGGTGGTAATAAAGTTGCAAACACCATCATTGTTGATCAAGGGGGAAAAGGAGCATTTAAAACAGTTCAAGCTGCCATTGATTCTGTTAAGAATCCAAATGATCGATGGGTTCTAATTAAAATAAATCCTGGTGTATACAAGGAAAAAGTTCTTATTCATCCAAGAAATGCAACATTTCATTCTTCTCCACCTAATGTAGTTTTGAGTGGAATTACATTCAAGAACACACATGGTACCGAAGGACCAGCGGTAGCAGCTTCAATATATGGTGACAAGACTGCAATTTTTGAATGTAGTTTCACTGGTTATCAAGATACGTTGCTTTCATCAAAGCGGCGTCAATATTTCAAAAATTGTTATGTTGAAGGTGAAACTGATTTTATTTTTGGTGAAGGTCAATCTTATTTCGAGAATTGTAAGATCAATGCCACTCAAGCGAAGTCAATACCCGTAGGTTTTATCACCGCACAACGTAGAGATTCATCGAATAATCCAAATGGTTATGTTTTTAAAGGAGGACGCATAGATGGAAATGGTCAAGTGAATCTTGGTAGACCTTGGGGTCCTTACTCAAGAGTTATATTTTGGGAAACATATTTTTCGTCTGTGGTAACTCCTCAAGGATGGGATCTCTGGAATTTAACAATTGGTGATGCGCAAAATACTGTCTTTGCTGAAGTAAATTGTACAGGACCAGGGGCCAATACTGAGAAACGAGTTGGGTGGGAGAAGAAACCAAGTAGCTTAAACTTAAATGAATATAGTTTGTCGTCTTTCATAAATAAGGATGGATGGCTTGATGATTTACCATCAATGTAA 897 0.3657 MFIQISMMFLLVLFMSCFSLGGAIDCGGNKVANTIIVDQGGKGAFKTVQAAIDSVKNPNDRWVLIKINPGVYKEKVLIHPRNATFHSSPPNVVLSGITFKNTHGTEGPAVAASIYGDKTAIFECSFTGYQDTLLSSKRRQYFKNCYVEGETDFIFGEGQSYFENCKINATQAKSIPVGFITAQRRDSSNNPNGYVFKGGRIDGNGQVNLGRPWGPYSRVIFWETYFSSVVTPQGWDLWNLTIGDAQNTVFAEVNCTGPGANTEKRVGWEKKPSSLNLNEYSLSSFINKDGWLDDLPSM 298
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00300 298 Gene3D - 23 80 IPR012334 -
Vifa6g00300 298 Gene3D - 81 297 IPR012334 -
Vifa6g00300 298 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 28 81 - -
Vifa6g00300 298 Pfam Pectinesterase 82 288 IPR000070 GO:0030599|GO:0042545
Vifa6g00300 298 SUPERFAMILY Pectin lyase-like 31 293 IPR011050 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa6g00300 Vifa-Chr6 122174355 122176181 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00300 9 239 Carbohydrate Esterase AT2G19150 39.925 6.40e-54 175