Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00298 ATGGAACTTCGTCGTCGTAAACCCCTTCCCGATGATGTGGATTCTGCGGCCGATAAGGGGAAGCGGCCGATGGATGATACTGATGGAAAGTGTGGCAGTGGCAGTGACAGTGACAGTGATGAAAGTGATCTTGTTCCGTCTTTGAAATCTGATTCTGATTTTGAAGCTGAAGACTATGATGGGCTCATGAATTTTGACTCGAATCAAGTCCCAACTTTAAGCATGAGTGATTCTGATAGCGATTCTTTAGCTAAAAAGATAATGGCACAGTCTCAAAAGAGAGGAAGAGAATCCGTGATAAAAATCGAAGACCTGAGTGATATAGAGAGAATGCTGCTGGAGCACGATGATGAAGTTCCAATTGATTCACCTAAGGCGAAAAAGAAGCAAAAAGCAAAGAAAACAAAAAAGGCTCCTAAGCCAGTGTTGTTATGGCATGCTTGGAAAGATGAACATGAGAGATGGATTGATCAAAATTTGTCAGAAGATGTTAACTTAGATCAAAGTGAAGTGATGAATGAGACGGCTGAGGCATCGTCAGATCTGATTGTTCCTTTGCTGAGGTACCAAAAGGAATGGTTAGCCTGGGCCTTGAATCAAGAAAGTTCTGTAACTAGAGGAGGAATCCTCGCCGATGAAATGGGTATGGGGAAAACTATTCAAGCAATTGCGCTTGTCCTTGCTAAACGTGAATTTCAAAAAATGAGTTGCGAACCAGATGAACACTCGGATTCACCCGGGTCATCTAAAGTCCTTCCGGCAATCAAAGGAACCCTTGTCATCTGTCCTGTGGTTGCTGCTACTCAGTGGGTTAGTGAGATTGATCGATTTACTTTGAAAGGAAGCACCAAGGTTCTGGTTTATCATGGGGCAAAGAGAGGGAAGAGTGCTGAACAGTTTTCAGAGTATGATTTTGTAATAACAACATATTCTATTGTTGAATCGGAGTACAGAAAAAATGTGATGCCTCCTAAGAAGAAGTGCCCATATTGTGGAAAACTATTTAAGGAGAGTACATTAACTTTTCACCAGAGGTACCATTGTGGGCCCGATGCTATTAAAACCGAAAAACAATCCAAGCAAGCAAAGAAAAATAAAAGTGGTCAGAGTTCAAAGTGGTATGGAGGGTTGAAACAGGGTTCCATCAAGAAGAAGAAGGAAACATGCTCAATAATAGAAGGCAATGATAAGTCATTTCTCCATGCTGTTAAGTGGCAGAGGATCATATTGGATGAGGCACACTATATAAAATCTAGGCATTCTAACACTGCGAAAGCAGTTCTTGCTTTAGAGTCTTTCTACAAATGGGCATTAAGTGGCACACCCCTTCAGAACCGTGTCGGAGAGCTATATTCTTTGGTACGATTTCTGCAGATAGTTCCTTATTCCTATTACCTGTGCAAGGACTGTGATTGCAGGATGCTTAATCATAGCTCCTCTAATCAATGTTCAAACTGCCCCCACAGTTCTGTTAGGCATTTTTGTTGGTGGAACAAAAATATTGCCACACCAATTCAATCACAAGGATATGGTGATGGAGGGAAAAGAGCTATGGTATTGCTCAAAAACAAAATTTTAAAGAGCATAGTGTTAAGGCGAACTAAAGTTGGCAGGGCTGCTGATCTGGCACTTCCTCCTAGGATTGTATCATTGAGGAGGGATAGCCTAGATACAAAAGAACAAGACTATTATGAATCACTATACAATGAAAGTCAAGCACAGTTTAATACCTACATACAAGAAAATACTCTGACAAATAATTATGCTCATATTTTTGACCTCCTCACACGACTACGTCAGGCTGTGGATCATCCATATCTTGTGGTGTATTCTCCAACTGCAGCAGCACTAAAAGGAGGGGACTTGGCTAGTAATGGTAATGTTGAAGTAGAATGTAGCCTTTGTCACGATGCAGTTGAAGATCCTGTGGTTACCGCTTGTGAGCATACTTTTTGCAAGGGATGCTTGATAGATTTCTCTGCTTCCTTAGGTCAAGTATCATGCCCCTCATGCTCTAAATTACTCACTGTTGATTTGACTTCCAACAAGGATGCTGTGGTTCATAAAACAACAATTAAGGGATTCAGATCTTCAAGCATTTTAAACAGAATTCAGATTGAGAATTTTCAGACAAGTACTAAAATAGAAGCATTGAGAGAAGAAATTAGATCTATGGTTGAAATGGATGGTTCTGCAAAAGCTATTGTTTTTAGCCAGTTCACGTCATTCTTGGATCTCATAAACTACTCCCTGCAAAAGTCAGGTGTATCTTGCGTTCAATTGGTTGGAAGTATGACATTGGCTGCTCGGGATGTTGCCATTAAGAAATTTACTGACGACCCAGACTGTAGAATTTTCCTCATGAGCCTGAAAGCCGGGGGTGTTGCTCTGAATTTGACTGCAGCATCTCATGTTTTCCTCATGGATCCTTGGTGGAACCCTGCAGTGGAGCGTCAGGCTCAAGACAGAATTCACCGCATAGGGCAATACAAACCAATCAGAATTGTGAGATTTGTCATTGAAAACACAATCGAGGAGAGGATCTTGAAACTTCAAGAGAAGAAGGAACTAGTATTTGAAGGGACTGTCGGTGGTTCTTCAGAGGCTCTAGGGAAGCTGACAGTGGCCGACTTGAGATTTCTTTTTGTTTAG 2652 0.4133 MELRRRKPLPDDVDSAADKGKRPMDDTDGKCGSGSDSDSDESDLVPSLKSDSDFEAEDYDGLMNFDSNQVPTLSMSDSDSDSLAKKIMAQSQKRGRESVIKIEDLSDIERMLLEHDDEVPIDSPKAKKKQKAKKTKKAPKPVLLWHAWKDEHERWIDQNLSEDVNLDQSEVMNETAEASSDLIVPLLRYQKEWLAWALNQESSVTRGGILADEMGMGKTIQAIALVLAKREFQKMSCEPDEHSDSPGSSKVLPAIKGTLVICPVVAATQWVSEIDRFTLKGSTKVLVYHGAKRGKSAEQFSEYDFVITTYSIVESEYRKNVMPPKKKCPYCGKLFKESTLTFHQRYHCGPDAIKTEKQSKQAKKNKSGQSSKWYGGLKQGSIKKKKETCSIIEGNDKSFLHAVKWQRIILDEAHYIKSRHSNTAKAVLALESFYKWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRMLNHSSSNQCSNCPHSSVRHFCWWNKNIATPIQSQGYGDGGKRAMVLLKNKILKSIVLRRTKVGRAADLALPPRIVSLRRDSLDTKEQDYYESLYNESQAQFNTYIQENTLTNNYAHIFDLLTRLRQAVDHPYLVVYSPTAAALKGGDLASNGNVEVECSLCHDAVEDPVVTACEHTFCKGCLIDFSASLGQVSCPSCSKLLTVDLTSNKDAVVHKTTIKGFRSSSILNRIQIENFQTSTKIEALREEIRSMVEMDGSAKAIVFSQFTSFLDLINYSLQKSGVSCVQLVGSMTLAARDVAIKKFTDDPDCRIFLMSLKAGGVALNLTAASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTVGGSSEALGKLTVADLRFLFV 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00298 883 SMART ultradead3 182 476 IPR014001 -
Vifa6g00298 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 404 882 IPR027417 -
Vifa6g00298 883 Pfam SNF2-related domain 202 608 IPR000330 GO:0005524|GO:0140658
Vifa6g00298 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 533 IPR027417 -
Vifa6g00298 883 CDD SF2_C_SNF 712 839 - -
Vifa6g00298 883 ProSiteProfiles Zinc finger RING-type profile. 632 672 IPR001841 -
Vifa6g00298 883 SMART helicmild6 745 828 IPR001650 -
Vifa6g00298 883 SUPERFAMILY RING/U-box 628 676 - -
Vifa6g00298 883 Gene3D - 549 879 IPR027417 -
Vifa6g00298 883 Pfam Helicase conserved C-terminal domain 717 828 IPR001650 -
Vifa6g00298 883 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 55 882 - -
Vifa6g00298 883 MobiDBLite consensus disorder prediction 353 378 - -
Vifa6g00298 883 MobiDBLite consensus disorder prediction 65 81 - -
Vifa6g00298 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 714 874 IPR001650 -
Vifa6g00298 883 Gene3D - 188 330 IPR038718 -
Vifa6g00298 883 MobiDBLite consensus disorder prediction 1 81 - -
Vifa6g00298 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 460 IPR014001 -
Vifa6g00298 883 Coils Coil 701 721 - -
Vifa6g00298 883 MobiDBLite consensus disorder prediction 1 56 - -
Vifa6g00298 883 Pfam Zinc finger, C3HC4 type (RING finger) 631 671 - -
Vifa6g00298 883 ProSitePatterns Zinc finger RING-type signature. 647 656 IPR017907 -
Vifa6g00298 883 CDD DEXDc_SHPRH-like 186 533 - -
Vifa6g00298 883 Gene3D - 338 548 IPR038718 -
Vifa6g00298 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 699 IPR013083 -
Vifa6g00298 883 SMART ring_2 632 671 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00298 Vifa-Chr6 121198851 121208525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00298 121 882 RAD5 or RAD16-like Gene Family AT1G05120 66.881 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa6g00298 SNF2_N 3.3e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00298 K15083 - gmx:100786366 1184.09