Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00281 ATGAAGTGGCAAAGAGGACACATTTTAGGTCATGGCTCAACCGCCACCGTCTCTCTCGCCACCGTTAACGGAGAGGTCTTCGCTGTGAAGTCGTCGGAGCTATCGTGTTCCGAGCCTCTAAAGAGAGAAGAGAGAATTCTATCTTCTATATCTTATCCCAATCCTTATGTGGTTGCTTACAAAGGGTGTGATATTTCGACGGAAAACAACAACAAACTCATGTATAATCTTTTCATGGAGTACATGCCATTTGGCACAGTTAGTCAACACGGTGGTCTGCTCGATGAGCAGACCATCGTGTACTATACAAGGCAAATAGTTAAAGGGTTAGACTATTTGCATTCAAATGGATTGGTGCATTGTGACATCAAGGGTGCCAATATCTTGATCGGAGAAGAAGGAGCCAAAATCGGAGACTTCGGATGTGCTAAAAGCATAAATGAAGCGGCCGCGCCAATCCGCGGGACGCCATTTTTCATGGCGCCGGAGGTGGTGTGTGGTGAAGAACAAGAATATCCTAGTGATATTTGGTCACTTGGTTGCACTATAATCGAAATCTTCACCGGTTCTTCGCCGTGGCCTAATGTAGATGATTCTCTTTCAGCACTTTTTCATATAGCATATTCCAATGAAGTTCCAAGAATTCCATGCTCATTATCTGATAAAGCAAAGGACTTTTTAGGGAAATGTTTAAGGAAGAATCCAAAAGAGAGGTTAACAGCTAGTCAACTTTTGAAGCATCCATTTCTTGAAGAGTTAAGTTCTAATTCTAAGCATGTTGTGGAATCTAATTCATATTCTCCAACAAGTATTCTTCAACAAGGCTTTTGGAGTTCAATGGAAGAATCAGAAAGCCTTAGGTTTGGCAATTTAATTCACACAAAAAGTTTGGTTGATGATAGAATCAAAAGGTTAACAATTGAGCCTTGTTTGGCATGGTGGCATGATGATAATCATGATGATGTTGATGAAAATTGGATCACAATTAGAGAGAATGAAGTTGATAGTTTTTGCAATTGTGGGTCAGAATTAGGTTCAACAAGTGATGAGTTGGTTTTGAAAGGGTTGGTAGAAAGTAATGTGAAAGATGGAATTAGTGGGCATGATTGTAGGGATGGTAGTTTTGTAGGTAGTAATTTTAATTTTCATGTAGGTATTGTAAAGATGCTACTTCCATCAACATTAGATTGTTTATAA 1197 0.396 MKWQRGHILGHGSTATVSLATVNGEVFAVKSSELSCSEPLKREERILSSISYPNPYVVAYKGCDISTENNNKLMYNLFMEYMPFGTVSQHGGLLDEQTIVYYTRQIVKGLDYLHSNGLVHCDIKGANILIGEEGAKIGDFGCAKSINEAAAPIRGTPFFMAPEVVCGEEQEYPSDIWSLGCTIIEIFTGSSPWPNVDDSLSALFHIAYSNEVPRIPCSLSDKAKDFLGKCLRKNPKERLTASQLLKHPFLEELSSNSKHVVESNSYSPTSILQQGFWSSMEESESLRFGNLIHTKSLVDDRIKRLTIEPCLAWWHDDNHDDVDENWITIRENEVDSFCNCGSELGSTSDELVLKGLVESNVKDGISGHDCRDGSFVGSNFNFHVGIVKMLLPSTLDCL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00281 398 ProSiteProfiles Protein kinase domain profile. 3 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00281 398 Gene3D Transferase(Phosphotransferase) domain 1 84 287 - -
Vifa6g00281 398 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 333 - -
Vifa6g00281 398 SMART serkin_6 3 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00281 398 Pfam Protein kinase domain 4 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00281 398 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
Vifa6g00281 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Vifa6g00281 398 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Vifa6g00281 398 CDD STKc_MAPKKK 2 250 - -
Vifa6g00281 398 SUPERFAMILY Protein kinase-like (PK-like) 3 264 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00281 Vifa-Chr6 117399739 117400935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00281 1 332 MAP Kinase Kinase Kinase AT1G05100 48.415 6.93e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vifa6g00281 Pkinase 7.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00281 K20716 - gmx:100794648 444.121