Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00279 ATGGATTCTTCTTCCCTTTCTCACACTGTCACCCCTTTCCAAGTCAACATTAGTCCATCCCAAAAAAATCATGAAACAATAACCGAGTTTGATTTCTTTAAGAATTACAACAACAATGATCATGATAATAACGTTGTTGTCTCTCCACCTGCCTTTACTGTTGATGTCCCTGTCCTTGACATTGATCATACCAACATTATCACTGATCTCCATCTCGGTCTCAATGTTGTTGCTATCAATGATGCTAGTGAACAAGGGGATGATGACATATCATCTAAATCCAACGACGAAAACACTAGGAATGAGATGGCTGTTCTTCGAGGCAAGCTTGCACGAATGGAAAAGGAGAATCATCGATTGAGTTTGATGCTTGATGAGCTTCAAACCGATTATGATACCCTCCTGATGCATTTTGAGAAAATGACGCAGGACAAGAAGGCCGAGGAAGATGGAGAACGAGAAGGGTTTGTTGGAAAATTTGAGAAGAAAAGGAAAATTGAGAATGGTGGAGCATTGGTTCCGAGAGATTCTTTGGAGCTTGGATTGGCTATTAAACCTAAGCCCGAGATGGATCCTGAAGCCTCTTCTTCAAGAACATTAACTTCTGGTCGACTTGGATCCCCACCGGAGAACAACTTTGAAGTTGCCTCCAAGGAGTTAGTGCTAAGCAAGAATGAGAATGTCAGTGACGAAGAAAAAAAGGAGCTTGGTAAAGGGAATGAAAGAGAGGATAGTCCCATTGCTCATGCTGAGAGACTTCCAAGGTTGAGTCCTCCAAACTATGCTCCAAATTTTGTTAATGTTGATCGAATTGATGTTGATGCTACCTTGAGGAGAGCAAGGGTTTCTGTTAGAACAAGAACAGATGGAAACGTGGTTTCTGATGGATGCCAATGGAGAAAGTATGGACAGAAAATGGCGAAAGGAAACCCGAGTCCTCGATCTTATTATAGATGCACCATGGGTAGTGGTTGCCCCGTTAGAAAACAGGTACAAAAGAGTGTTGAAGACAAATCAGTGGTAATCACAACCTATGAAGGATATCATAACCATACTTTACCACCAGCAGCCATGGAAATGGCACAAACAACTGCAGCAGCTGCAAGAATGCTTCTTTCAGGATCAACCTCAAGCAACAACAGAACAGCGAATGCGAGTTTCCTCCGAAGAGGAACCATTCCCGGTTCTTCGAGTCTTGCGACTATCTCATCTTCTGCTCCGTTTCCCACCATAACGCTCGACTTCACTCAACCTCCAAATCCGCTACAGCTCCAAATGCTTCAAAATCAGTTACAAGTTCCGTTGCCTCATATGTTTAACCAGGTACCTTATAACCAATCAACATTTTCTGGCCTACAATTGTCACAACAAAATGTTGCTGACACTGTTTCTGCTGCCATTGCTGCTGATCGGAATTTCACTGCAGCTTTAGCAGCTGCTCTTACTTCCTTCATTGGTGCTGCTCAGCCGAACAACAACAACAACAACGCTACAAATAATGACGGCGCAGCAAGCAACAACAATGGAAATATCACAAGTAGCAGCAATAATAATAAAGGGAAGGAATAA 1569 0.4264 MDSSSLSHTVTPFQVNISPSQKNHETITEFDFFKNYNNNDHDNNVVVSPPAFTVDVPVLDIDHTNIITDLHLGLNVVAINDASEQGDDDISSKSNDENTRNEMAVLRGKLARMEKENHRLSLMLDELQTDYDTLLMHFEKMTQDKKAEEDGEREGFVGKFEKKRKIENGGALVPRDSLELGLAIKPKPEMDPEASSSRTLTSGRLGSPPENNFEVASKELVLSKNENVSDEEKKELGKGNEREDSPIAHAERLPRLSPPNYAPNFVNVDRIDVDATLRRARVSVRTRTDGNVVSDGCQWRKYGQKMAKGNPSPRSYYRCTMGSGCPVRKQVQKSVEDKSVVITTYEGYHNHTLPPAAMEMAQTTAAAARMLLSGSTSSNNRTANASFLRRGTIPGSSSLATISSSAPFPTITLDFTQPPNPLQLQMLQNQLQVPLPHMFNQVPYNQSTFSGLQLSQQNVADTVSAAIAADRNFTAALAAALTSFIGAAQPNNNNNNATNNDGAASNNNGNITSSSNNNKGKE 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00279 522 MobiDBLite consensus disorder prediction 224 250 - -
Vifa6g00279 522 MobiDBLite consensus disorder prediction 194 208 - -
Vifa6g00279 522 MobiDBLite consensus disorder prediction 489 522 - -
Vifa6g00279 522 Coils Coil 96 130 - -
Vifa6g00279 522 ProSiteProfiles WRKY domain profile. 288 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g00279 522 SUPERFAMILY WRKY DNA-binding domain 285 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g00279 522 Pfam WRKY DNA -binding domain 295 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa6g00279 522 MobiDBLite consensus disorder prediction 185 258 - -
Vifa6g00279 522 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 83 497 IPR044810 GO:0003700
Vifa6g00279 522 Gene3D WRKY domain 278 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa6g00279 522 SMART WRKY_cls 293 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00279 Vifa-Chr6 116524399 116526789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00279 87 485 WRKY Transcription Factor Family AT4G04450 41.109 2.64e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa6g00279 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00279 - - psat:127104539 625.55