Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00268 ATGTTTAACGGTATGATGGATCCCGATTTGATCAGAATCGCTCAGGAACAAATGAGTCGCATGTCTCCCGCTGATATGGCTCGGATCCAACAACAGATGATGTCGAATCCAGATTTGATGAGGATGGCTTCCGAGAGTATGAAGAATATGAATCCTGAGGATTTTAAGCTTGCTGCTGAACAGTTGAAGCATACTCGGCCGGAAGAAATGGCGGAGATTGGTCAGAAGATGGCTAATGCGTCGCCGGATGAAGTTGCGGCTATGCGTGCTCACGCGGATGCGCAGATTAAGTATCAATTGAGTGCGGCGGAGATGTTGAAGAAGCAGGGAAATGAACTTCACAATCAAGGAAAGTTCGATGATGCTTTGCAGAAGTATAAGTTGGCCAAGGAAAACATCAAAGAGATTCCATCTTTTCAAAGTAGAAAACTTCTTTTGGCATGCTCACTTAACTTGATGGCCTGCTACTTGAAGACAAGGAAGTATGATGAATGCATAAAAGAAGGTTCTGAGGTTTTGGCGTATGACGCAAAGAACCTCAAGGCTCTTTATCGAAGAGGCCAGGCATATAAGGAACGAGGCCTGCTACAGGATGCCGTCACTGATTTGAGCAATGCACTTGAAGTGTCTCCTGATGATGATATAATTGGAGAGCTTTTACGGGACACCAAAGAACAGTTGATAAAGGAAGGTGGTCATTGTGCTCCTGGAAGATTAGTAATTGAAGAAATAACTGAAGAAGTTGAGAATGTGCCTTCTGGAAACAACAGAAACTCTTCTACCGAACAAACGATTGATCAACCAAAAAAGTCTGGCGACTCTTCTAAGAGTTACAATATAGCTAACAATGGAAATCTAAAATCAAATTCAGACAGTATAGATACACTGAAGAAAGATCCAGAAGCCATCAGATCATTCCAAAATTTTATTTCCAAAGCTGATCCTGCCACTCTGGCTTCTTTGAACATTGGGCAATCCCAAGACGTGTCTCCAGATATGATTAAAGCGTCCTCGGATATGATCGGCAAGATGTCACCTGAGGAACTTCAAAAAATGTTCGACATGGCGTCTTCATTTCAAGGGAACAACCCATTTCTCAGAGGAGGTTCCTCTGATTCTCCTTTCAACTCTGGATCAGTTCCTCCCAATGTGACACCTAATATGCTTAAAACAGCAACTGATATGATAAGTAAAATGCCACCGGATGACCTTAAGAAGATGTTTGAAATGGCATCCTTAATGAAAGGGAAAGAATCTATTCCATCAGCAGCAGCTGTAGACAAGAAAGAAAGAAATTTGTCACAGTCAAACTTCCCATCCTCAAGCACCACTCGTGCTTTTGGAGAATCAAGTTCTTCTGACAATGCGTTTTCAAATATTATAAATGCTTCAGAGCCAAACTTCCCATCCTCAAGTACTGATTTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGACAGATGTTCACATCATTGGTTAAAAATATGAGCCCAGAAATGATGGCAAACATGGGAAAACAATTTGGTTTCGATCTTTCACCAGAAGACGCTGAAAAAGCTCAGCAAGCCATGTCATCCATATCACCAGAGAAATTGGAGAAAATGATGCTTTGGGCGGACAGGCTTCAAAGAGGGGCTGAATGTGCAAAAAAGACAAAGAACTGGTTTCTAGGGAAATCAGGCCTTGTCTTTGCAATATGCATGCTCATTTTGGCTTTCATTCTTCACCGGTTAGGTTTCATTGGTAGCTAG 1761 0.4196 MFNGMMDPDLIRIAQEQMSRMSPADMARIQQQMMSNPDLMRMASESMKNMNPEDFKLAAEQLKHTRPEEMAEIGQKMANASPDEVAAMRAHADAQIKYQLSAAEMLKKQGNELHNQGKFDDALQKYKLAKENIKEIPSFQSRKLLLACSLNLMACYLKTRKYDECIKEGSEVLAYDAKNLKALYRRGQAYKERGLLQDAVTDLSNALEVSPDDDIIGELLRDTKEQLIKEGGHCAPGRLVIEEITEEVENVPSGNNRNSSTEQTIDQPKKSGDSSKSYNIANNGNLKSNSDSIDTLKKDPEAIRSFQNFISKADPATLASLNIGQSQDVSPDMIKASSDMIGKMSPEELQKMFDMASSFQGNNPFLRGGSSDSPFNSGSVPPNVTPNMLKTATDMISKMPPDDLKKMFEMASLMKGKESIPSAAAVDKKERNLSQSNFPSSSTTRAFGESSSSDNAFSNIINASEPNFPSSSTDLQEQMRNQMKDPAMRQMFTSLVKNMSPEMMANMGKQFGFDLSPEDAEKAQQAMSSISPEKLEKMMLWADRLQRGAECAKKTKNWFLGKSGLVFAICMLILAFILHRLGFIGS 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00268 586 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 4 373 - -
Vifa6g00268 586 MobiDBLite consensus disorder prediction 421 453 - -
Vifa6g00268 586 SMART tpr_5 180 213 IPR019734 GO:0005515
Vifa6g00268 586 SMART tpr_5 103 136 IPR019734 GO:0005515
Vifa6g00268 586 SMART tpr_5 146 179 IPR019734 GO:0005515
Vifa6g00268 586 MobiDBLite consensus disorder prediction 249 293 - -
Vifa6g00268 586 MobiDBLite consensus disorder prediction 249 291 - -
Vifa6g00268 586 MobiDBLite consensus disorder prediction 429 453 - -
Vifa6g00268 586 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Vifa6g00268 586 SUPERFAMILY TPR-like 96 220 IPR011990 GO:0005515
Vifa6g00268 586 Gene3D Tetratricopeptide repeat domain 89 231 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00268 Vifa-Chr6 115776662 115783662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00268 93 213 Calmodulin-binding Proteins AT5G48570 36.220 2.68e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00268 - - gmx:100800315 899.042