Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00263 ATGAGTGATATACGGAAGTGGTTCATGAAATCACATGAAAAAACCAACAATGCTGCCGCCGGTAACTCCAAACCCTCCAATCCACCGAAACCTTCGCCGGTTAAACCCGACCCGGAGAAAACGGTACCTGAAGGTCAAGTAAGTTCAGTCAGAAGGAAAACTAGCAAATATTTTGATAAGGAAAAATCAAAGCCGAAAGATGAGATTGAAGAAACACAAGCGCTTCCGGCTAAAAGGAAGACTGTGAACGACAGTAATGAAGATGATGGAAAGAAGTTAGCTGGTTCAACTCCTACTAAGAAATTGAAGAGTGGTTCAGGTAGGGGGATCCCGCAGAAGCCTGTGGATTTGGATGGAAGTGATGAAGACAATGAGAAAGATGGCGTGTCTCCTATCAAATCTGGTGGTAGGGGTCGTGGTGGAAGAGGAGCATCGACACAAACAACTGGTGGGAGAGGCCGAGGGGGTGGTAGGGGAACCCCCAAGAAATCTGCTGATTTGGAAGAAAGTGATGAAGATGATGAGAAAAGTGCTGCTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCCTCTACGCCAGCATCTGGTGGGAGGGGCCGAGGAGGTGGTAGGGGTGGATTCATGAATTTCGGTGAAAGAAAAGATCCACCACACAAGGGTGAAAAGGAACTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGTTTAACGTTTGTAATAAGTGGAACACTAGACAGTTTGGAACGAGAAGAAGCAGAAGTTTTGATTAAACGCCACGGTGGCCGTGTCACCGGATCAGTCAGCAAGAAAACAAATTATTTGTTATGTGACGAAGATATTGGGGGAAGGAAGTCTGAAAAAGCTAAAGAGCTAGGGACTTCATTCCTCACAGAGGATGGGTTGTTTGATATGATCCGGGCATCAAAACCCGCAAAAGCTCCTAAGCAAGATGAAAGCAAGAAATCTCTGAATAAGGCTGTTGCAGTGCCATCCCCGTCAAAAGTTCCTCTGAAAGCAGAAACAAAGGCTGTTGCAATGCCATCCCCTTCAAAAATTCCTTTGAAAGCAGGAACAAAGGCCTCTTTGTCTTCATGCTCACCTTCCAACCAAGTGAAGCTTAAGAAAGCTGCTACTGTTCAGTCTAATGTGATGTGGACAGAGAAACATCGACCTACAAATCCAAAGGATATCATCGGGAATCAGTCACTTGTTTTACAGCTTCGAAATTGGTTAAAAGGTTGGCATGAGCAATTTTCTAACATAGGTGGTATTAAAAAAGGAAAAAAGCAGAATGACTCTACTTCCAAAAAGGCTGTCTTGTTAAGTGGAACCCCCGGTATAGGCAAAACAACATCAGCAAAGCTGGTGTGTCAGGAGCTGGGTTTCCAGGCCATAGAGGTAAATGCCAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAAAAAGGAATTAGCGGAAGCAATTCAAATTCTATCAAGGAACTTGTGACGAATGAGGCCCTTGGCCCTAATATGAATAGGCCAAAGCAGTCCAAAACTGTGCTCATTATGGATGAAGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCCATTATCTGCATTTGCAATGACCGTTACAGCCAGAAATTAAAAAGCCTAGTGAACTACTGTTTGCTTCTTAGTTACCGGAAGCCTACAAAGCAACAGATGGCAAAGAAGTTTATGGAGGTTGCAAAGGCTGAAAGGCTTCAAGTTAATGAGATTGCTCTTGAGGAATTAGCAGAAAGAGTTAATGGAGATATGCGAATGGCACTAAACCAGTTACAATATATGGGCCTCTCCATGTCAGTTATCAACTACGACGATATCAGGCAGCGCTTACTTACCAATGCGAAAGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTGAATGCTGGAAAGATGAGAATGGAAGAGAGGATTACTCTTAGCATGAGTGACCCTGATCTTGTTCCTCTACTTATCCAGGAAAATTATGTTAATTATAGACCAAACTCGGTTCATAAGGATGACAGTGGTGGTATAAAACGCATGCAACTGATTGCCCGTGCTGCCGAGTCTATTGCTGATGGCGATATAGTGAACGTACAGATTCGCAGATATCGACAGTGGCAGCTTTCTCAAACTAGTTCTCTGGCATCATGTATAATTCCTGCTTCATTGTTACATGGGCCAAGGGAAGTACTTGAACAGGGAGAACGAAATTTTAACCGATTTGGTGGTTGGCTGGGGAAGAATTCGACAAGGAGTAAAAACATGAGACTTATGGATGACCTGCATGTTCACATTCTTGCATCTCGCGAATCTAGTTCGGGAAGGGACACTATTCGCCTGGAATACCTTACTCTTCTTCTTAAAAAATTGACAGAACCTCTCAAAGTCCTTCCTAAGGCTGAAGCTGTCGAGCAAGTTGTGGAGTTTATGAATACATACTCAATCAGTCAGGAAGATTATGATACTATAGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACTGCCTGCCGTCAAGTCAGCCTTGACAAAAGCATACAAAGAGCAAAGCAAAACTCGGATGGTTCGAGCTGCAGATCTAATTACTCTTCCTGGAATTAAAAAGGCACCTAAAAAGAGAATTGCTGCTATATTAGAACCGGCTGATGAAGAAGTGGAACAAGGTGATGGTAACAATGCCTTGGATGAGAGTGAAGAAGAGAACAACTCTGACGCAGATGAGTCAGGTGCTGCAACTGGTGAGAAGCTGAAGTCAGAACTTCAAAGTTTGAGTTCAAAGGGCATGCAAGTACAATTGGAATTAAAGGGAACTGCAAGTGCCAAAAAGGCATCTGGTGGTAGAGGTAAAGGTGCTTCAGCATCTGGGCAGAAAGTTGCTCAAACGGCAAAGGCTCCTGCAAAAAGAAAAAGGTGA 2997 0.4361 MSDIRKWFMKSHEKTNNAAAGNSKPSNPPKPSPVKPDPEKTVPEGQVSSVRRKTSKYFDKEKSKPKDEIEETQALPAKRKTVNDSNEDDGKKLAGSTPTKKLKSGSGRGIPQKPVDLDGSDEDNEKDGVSPIKSGGRGRGGRGASTQTTGGRGRGGGRGTPKKSADLEESDEDDEKSAAKSGGRGRGGRGASTPASGGRGRGGGRGGFMNFGERKDPPHKGEKELPEGAPNCLAGLTFVISGTLDSLEREEAEVLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPKQDESKKSLNKAVAVPSPSKVPLKAETKAVAMPSPSKIPLKAGTKASLSSCSPSNQVKLKKAATVQSNVMWTEKHRPTNPKDIIGNQSLVLQLRNWLKGWHEQFSNIGGIKKGKKQNDSTSKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSNSNSIKELVTNEALGPNMNRPKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKFMEVAKAERLQVNEIALEELAERVNGDMRMALNQLQYMGLSMSVINYDDIRQRLLTNAKDEDISPFTAVDKLFGLNAGKMRMEERITLSMSDPDLVPLLIQENYVNYRPNSVHKDDSGGIKRMQLIARAAESIADGDIVNVQIRRYRQWQLSQTSSLASCIIPASLLHGPREVLEQGERNFNRFGGWLGKNSTRSKNMRLMDDLHVHILASRESSSGRDTIRLEYLTLLLKKLTEPLKVLPKAEAVEQVVEFMNTYSISQEDYDTIVELSKFKGHPNPLDGILPAVKSALTKAYKEQSKTRMVRAADLITLPGIKKAPKKRIAAILEPADEEVEQGDGNNALDESEEENNSDADESGAATGEKLKSELQSLSSKGMQVQLELKGTASAKKASGGRGKGASASGQKVAQTAKAPAKRKR 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00263 998 FunFam Replication factor C subunit 1 644 754 - -
Vifa6g00263 998 CDD BRCT_RFC1 228 306 - -
Vifa6g00263 998 MobiDBLite consensus disorder prediction 309 329 - -
Vifa6g00263 998 CDD HLD_clamp_RFC 572 630 - -
Vifa6g00263 998 Gene3D - 382 571 IPR027417 -
Vifa6g00263 998 SMART AAA_5 435 573 IPR003593 GO:0016887
Vifa6g00263 998 Gene3D BRCT domain 205 307 IPR036420 -
Vifa6g00263 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 383 632 IPR027417 -
Vifa6g00263 998 MobiDBLite consensus disorder prediction 1 230 - -
Vifa6g00263 998 FunFam Replication factor C subunit 1 572 643 - -
Vifa6g00263 998 MobiDBLite consensus disorder prediction 906 998 - -
Vifa6g00263 998 MobiDBLite consensus disorder prediction 115 132 - -
Vifa6g00263 998 Gene3D - 644 754 - -
Vifa6g00263 998 Pfam Replication factor RFC1 C terminal domain 713 875 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Vifa6g00263 998 MobiDBLite consensus disorder prediction 943 960 - -
Vifa6g00263 998 FunFam Replication factor C subunit 1 204 307 - -
Vifa6g00263 998 FunFam Replication factor C subunit 1 383 571 - -
Vifa6g00263 998 SUPERFAMILY BRCT domain 228 309 IPR036420 -
Vifa6g00263 998 MobiDBLite consensus disorder prediction 53 96 - -
Vifa6g00263 998 SMART BRCT_7 230 308 IPR001357 -
Vifa6g00263 998 PIRSF RFC1 1 976 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Vifa6g00263 998 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 14 984 - -
Vifa6g00263 998 CDD AAA 432 535 - -
Vifa6g00263 998 SUPERFAMILY post-AAA+ oligomerization domain-like 643 789 IPR008921 GO:0003677|GO:0006260
Vifa6g00263 998 MobiDBLite consensus disorder prediction 212 226 - -
Vifa6g00263 998 Pfam BRCA1 C Terminus (BRCT) domain 230 305 IPR001357 -
Vifa6g00263 998 MobiDBLite consensus disorder prediction 159 182 - -
Vifa6g00263 998 Pfam ATPase family associated with various cellular activities (AAA) 439 538 IPR003959 GO:0005524|GO:0016887
Vifa6g00263 998 ProSiteProfiles BRCT domain profile. 228 309 IPR001357 -
Vifa6g00263 998 Gene3D - 572 642 - -
Vifa6g00263 998 MobiDBLite consensus disorder prediction 910 933 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00263 Vifa-Chr6 112646967 112655252 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00263 1 955 Core DNA Replication Machinery Family AT5G22010 63.872 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00263 K10754 - gmx:100802809 1303.89