Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00236 ATGATGTTTGAACGGAAGCAGTTCAAGACTAGGTTATGCGCTCTCTACCAGAAAGGTCGCTGTAATCGCCTCAACTGTTCCTTTGCTCACGGGAATGCCGAACTTCGACGTTTCTCTTCCTCCTCTTATAATGGAAGGAAAGACTATTTAGGTAATGACTTGAGGGATAAACTTGATAGAAGGCAATTATCACCTCCAAGATATTCACCATCTCGTGATGCAAGAGGTCGACAGACTATTCGCGAATACAGTCCACCGAGGTCTCCAGAGAAAAGAAGTGACCGAAGACATAAGAGAAAACAAGTCATCAGTGGCCAAAGTGATATTTCTGGAAGTTTAAAGGTCTCTGATAGAATTAATGATCAAGTTAAAGATGGAAAAATGTTTTCCTCTGGTTCTAGAAATACTGTTGAAGATCAGCTGAAGAAAGTACATTCTGATATCAAAACTCTTGAGAACCGAAAATTCCAATTATCGGTCTACCTAGATGAGAGTGTTCAAGAAGTGGATGGCCTTAATTCTAGAATTCAGGAGCTTGAGGCTCAGTTAAACAAGGAGAACGAGGGGTATAAAAGAATTACTTCTAGAATAAGGAAGTTTGTTCGAATGCATAATCATAATTTGGAGCTGCAAGATGAACTGAAGAGATCACAGGTTCGATTCCAAAGGTTTGGAGATCACCTTTTGACAGACATTTCTAGAATTGGTGCTAGTGAGGAAGATTTAAATGTTGATATTGTAAGCAATGGTGAGAATACTGGTCTTCCTCCAACCACTAAACTTACTTTGGAGCAGAATGGCAGCTCTCCCGGCAGAAAATGGCTGCATGCAAAACCAGATTCTGTGGAAGAGTTAAAACAAGATAAGTCAAAAGTCGGGCATTTGGTTGAAACAGAAAGAAGTGGGAAGCGTTCTCGATGGAGTTTGTCTGCTAAAACGAATGACAAGGATTGTGAAGAGGCCCTAGGCAATGGAATTGAAGTTACTAGGCACCTAGATCTTGAAGGAAAATGCAAGAAAGGAATATGGAGTTCTTCAAACAACATTCATTCAGAAAAGCCAAAGGAATCCAGGATTGAAGTGCCGTCAACCAGCATGGCAGCTCATGTGTTTGATGAGGAAGTTGATATTGAACATGACAACGTAACTGATATCATTGAAAATGCAAAGACAGAAAATAAGAATGGAGTGGAGTTCCAGGTGAAGGGCATATCTCACATGCTTACCTCAGATTTGATTCCCTAG 1245 0.4048 MMFERKQFKTRLCALYQKGRCNRLNCSFAHGNAELRRFSSSSYNGRKDYLGNDLRDKLDRRQLSPPRYSPSRDARGRQTIREYSPPRSPEKRSDRRHKRKQVISGQSDISGSLKVSDRINDQVKDGKMFSSGSRNTVEDQLKKVHSDIKTLENRKFQLSVYLDESVQEVDGLNSRIQELEAQLNKENEGYKRITSRIRKFVRMHNHNLELQDELKRSQVRFQRFGDHLLTDISRIGASEEDLNVDIVSNGENTGLPPTTKLTLEQNGSSPGRKWLHAKPDSVEELKQDKSKVGHLVETERSGKRSRWSLSAKTNDKDCEEALGNGIEVTRHLDLEGKCKKGIWSSSNNIHSEKPKESRIEVPSTSMAAHVFDEEVDIEHDNVTDIIENAKTENKNGVEFQVKGISHMLTSDLIP 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00236 414 ProSiteProfiles Zinc finger C3H1-type profile. 7 33 IPR000571 GO:0046872
Vifa6g00236 414 Gene3D - 2 37 - -
Vifa6g00236 414 MobiDBLite consensus disorder prediction 74 91 - -
Vifa6g00236 414 MobiDBLite consensus disorder prediction 49 63 - -
Vifa6g00236 414 MobiDBLite consensus disorder prediction 49 117 - -
Vifa6g00236 414 Coils Coil 134 154 - -
Vifa6g00236 414 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 2 398 IPR045868 GO:0046872
Vifa6g00236 414 Coils Coil 162 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00236 Vifa-Chr6 102175207 102182410 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g00236 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00236 - - gmx:100811131 531.561