Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00235 ATGATGTTTGAACGGAAGCAGTTCAAGACTAGGTTATGCGCTCTCTACCAGAAAGGTCGCTGTAATCGCCTCAACTGTTCCTTTGCTCACGGGAATGCCGAACTTCGACGTTTCTCTTCCTCCTCTTATAATGGAAGGAAAGACTATTTAGGTAATGACTTGAGGGATAAACTTGATAGAAGGCAATTATCACCTCCAAGATATTCACCATCTCGTGATGCAAGAGGTCGACAGACTATTCGCGAATACAGTCCACCGAGGTCTCCAGAGAAAAGAAGTGACCGAAGACATAAGAGAAAACAAGTCATCAGTGGCCAAAGTGATATTTCTGGAAGTTTAAAGGTCTCTGATAGAATTAATGATCAAGTTAAAGATGGAAAAATGTTTTCCTCTGGTTCTAGAAATACTGTTGAAGATCAGAAATGTTTGCAGCTGAAGAAAGTACATTCTGATATCAAAACTCTTGAGAACCGAAAATTCCAATTATCGGTCTACCTAGATGAGAGTGTTCAAGAAGTGGATGGCCTTAATTCTAGAATTCAGGAGCTTGAGGCTCAGTTAAACAAGGAGAACGAGGGGTATAAAAGAATTACTTCTAGAATAAGGAAGTTTGTTCGAATGCATAATCATAATTTGGAGCTGCAAGATGAACTGAAGAGATCACAGGTTCGATTCCAAAGGTTTGGAGATCACCTTTTGACAGACATTTCTAGAATTGGTGCTAGTGAGGAAGATTTAAATGTTGATATTGTAAGCAATGGTGAGAATACTGGTCTTCCTCCAACCACTAAACTTACTTTGGAGCAGAATGGCAGCTCTCCCGGCAGAAAATGGCTGCATGCAAAACCAGATTCTGTGGAAGAGTTAAAACAAGATAAGTCAAAAGTCGGGCATTTGGTTGAAACAGAAAGAAGTGGGAAGCGTTCTCGATGGAGTTTGTCTGCTAAAACGAATGACAAGGATTGTGAAGAGGCCCTAGGCAATGGAATTGAAGTTACTAGGCACCTAGATCTTGAAGGAAAATGCAAGAAAGGAATATGGAGTTCTTCAAACAACATTCATTCAGAAAAGCCAAAGGAATCCAGGATTGAAGTGCCGTCAACCAGCATGGCAGCTCATGTGTTTGATGAGGAAGTTGATATTGAACATGACAACGTAACTGATATCATTGAAAATGCAAAGACAGAAAATAAGAATGGAGTGGAGTTCCAGGTGAAGGGCATATCTCACATGCTTACCTCAGATTTGATTCCCTAG 1257 0.4041 MMFERKQFKTRLCALYQKGRCNRLNCSFAHGNAELRRFSSSSYNGRKDYLGNDLRDKLDRRQLSPPRYSPSRDARGRQTIREYSPPRSPEKRSDRRHKRKQVISGQSDISGSLKVSDRINDQVKDGKMFSSGSRNTVEDQKCLQLKKVHSDIKTLENRKFQLSVYLDESVQEVDGLNSRIQELEAQLNKENEGYKRITSRIRKFVRMHNHNLELQDELKRSQVRFQRFGDHLLTDISRIGASEEDLNVDIVSNGENTGLPPTTKLTLEQNGSSPGRKWLHAKPDSVEELKQDKSKVGHLVETERSGKRSRWSLSAKTNDKDCEEALGNGIEVTRHLDLEGKCKKGIWSSSNNIHSEKPKESRIEVPSTSMAAHVFDEEVDIEHDNVTDIIENAKTENKNGVEFQVKGISHMLTSDLIP 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00235 418 ProSiteProfiles Zinc finger C3H1-type profile. 7 33 IPR000571 GO:0046872
Vifa6g00235 418 MobiDBLite consensus disorder prediction 74 91 - -
Vifa6g00235 418 MobiDBLite consensus disorder prediction 49 63 - -
Vifa6g00235 418 MobiDBLite consensus disorder prediction 49 117 - -
Vifa6g00235 418 Gene3D - 2 37 - -
Vifa6g00235 418 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 2 402 IPR045868 GO:0046872
Vifa6g00235 418 Coils Coil 166 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00235 Vifa-Chr6 102175207 102182410 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa6g00235 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00235 - - gmx:100811131 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00235 6 102175207 102182410 Vifa6g00235 6 102175207 102182410 ECH