Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00222 ATGGAATTGACAAGAATCGGTTTTACTGTTACTTATGTCATTCTCCTTTGTGCTCTGGCTCATGGGGGCTCAGAGGGGAAAGAAGATGAGCTATGTACAGATGGTTCTGTTTCCTCACCTTTCCTCAACCTTCATCGAAAACAGGCGGAGAATGTGCGGAAACATTCCAGGAAAGAATTGACAGAGAAGAGCAATGATGTTGAAGACATCAACTTGCATCCGTTGGAAGGAAGCAGTGACATGAAATCTATTCTTCCAACAGAAAACAACATTCACAAAACAACCAAATCATTACCTCCCCATAAGGAAAGAAAAGTATTGGACTGCATAAAAACAAGTGCTACTCCTCCGGCACCTATTTCCGGAAAGAAATTGTCTTCGAGATTCTTGCTAACAAAACATTCTAGATCAACCTTGGCTTTAAAAAACAATCATTATTATCATCGTCGTCATCGAACAAATTTAATCGCTGAAACACCACTTTATCATATATCACCATTGTCACCATTGTCACCAAGGTCTAGTGCTAATAGTCCATCCCCCGGGCATTCATTGGTAGCACCAATTCGTGTTTCAACACCAACAATTTCTTCAACACCATCACCTACTCCTGTTCCTGTTCCTAGTACACCATCACCTACTCCTGTTCCTGTTCCTAGTACACCATCACCTACTCCTGTTCATGTTCCTAGTACACCATCACCTACTCCTGTTCCTGTTCCTAGTACACCATCACCTACTCCTGTTCCTGTTCCTGTTCCTAGTACACCATCACCTACTCCTGTTCCTGTTCCTAGTACACCATCACCTACTCCTGTTCCTGTTCCTAGTACGGGAATCATGTACTTACCACTCCCTCCAGGTATTTTTGCACAGACTCCACCGCCTCCACGAAAATCTGCTCCTCCATCTCATATAACAAGTGTTCCGATAACTTCGCCGCCTTCACTAAACCAAGATGAGAAAAAGAAGAAAGCAATTATTTTAGCTGCATCTGTATCAGGAATCATAGTCTTGATAGGATTGTCGCTTTGCTATCGTGAGGCCAAAACCGGTAAAGTGGAGAGAGATGAGAGCCATTTGCTCATATTAACCTCAAATGATTATTCTGGAGGTCCACCGAAGATTGTCCGTTTAGGAGATACTAATACAGAAGAATCGGGATCTGGTGTTGTTATAAACAAAGGAAAGAATTCGTCTAGTGGAAGAAATTGGTCCATGAAGGCTGGAGATAATAACAATATCACAGTAGCTGAAACATCGACATCAGAAGATATCGGACTAGTAACAGCAAGTTCTTCTGGAATATCAGCCCCTCCGCCTCCTGGCCCACCACCACCTCCTCCTCCACGGCCACCTGCTCTTGCATTTCGTCCTCCACCACCTCCAAAATCCAGCCATCCACCACCTGCTCCTCCTCCCAAACCAATGGCTGGTAAAAACAAAGCTGTACCTCTTGGACCGCTAAAACAAGGAAGTTCTAGTGATGGTGATGCTCCAAAGCCTAAACTAAAGCCGTTCTTTTGGGACAAGGTTAATGCAAAACCTGATCAATCAATGGTGTGGCATGAGATCAATGCAGGGTCATTTGTGTTCAATGAAGAAATGATGGAGTCTTTATTTGGTTGCGCCAACCAGAATAAAAATGAACGTAGAAAAGATTCACCTTCTCTAGATACTTCAGTGCATTATATTCAGATTATTGACCCTAAGAAAGCACAGAATTTATCAATTCTGTTACGTGCTCTGAATGTGACAACAGTAGAAGTAGTTGATGCACTAAACGAAGGTAACGAGATTCCTGTGGAGCTTATCCAAACATTATTGAAAATGGCACCAACACAAGAAGAGGAACTGAAACTTAGGTTATTCTCTGGAGAACTGTCTCAACTAGGTCCAGCTGAGAGGTTTCTCAAAGTACTGGTTGACATTCCGTTCGCTTTCAAACGTCTCGAATCTCTCATGTTCATGTTAATTCTTCGAGAAGAGTCCTCAAGCATCAAGGATTCTTTCGAAACATTAGAGGTTGCTTGCGACAAGCTGAGAAAAAGCAGGTTATTCTTAAAATTACTAGAAGCAGTACTCAAAACCGGAAACCGAATGAACGATGGTACATATCGCGGTGGTGCTCAAGCATTTAGGCTCGACACACTTTTAAAACTCTCGGACGTAAAAGGAACAGACGGTAAAACAACGCTATTACACTTTGTGGTTCAAGAAATTATACGTTCAGAAGGAATAAGAGCAGTAAGAACCGAAAGAGCAAGCAGAAGCCTTTCAAGCATAGGAACGGAGGATGTAGATTATGAAAACGAAGAATCAGAAGAACACTATCGTAGCCTTGGACTTCAAGTAGTTTCAAGCTTAAACAGTGAACTTGAAGATGTTAAGAAAGCGGCACTAATAGACGGTGATGCATTGAGTACCGCGGTTTCGAAAATCGGTCATTCGTTGGTTAAGAGCCGGGACTTTTTGAACAATGATCTCAAGAATTTGGAAGAAGAGAGTGAGTTTCAAATCTGTTTAGAGAAGTTTATGGAACATGCGAAAGAAGAGGTGACGTTGCTTGTTGAAGAAGAAAAGAGGATCATGGGGTTGGTTAAGAGTACAGCAGATTATTTTCATGGGAATGCAGGGAAAGATGAAGGGCTGCGATTGTTTTTGATTGTGCGCGATTTTTTGATAATATTGGATAAGGTTTGCAAGGAAGTGAAAGAAGCTACATTGAAGGCTATGAAGGCTTCTAACAAGAAAGAAACTCCGTCACCGTCAGTGTCAGTTCCGTCTTCTCCGGATACACGCCAACGGTCGCCGTTGCAGCAGCAGCAGTCTTCTGATCTACATAGGCGATTGTTTCCGGCTATTGCAGGGCGGAGAGTGGATTACTCTAGCTCAGACGACGATGATGATGATTAG 2916 0.4263 MELTRIGFTVTYVILLCALAHGGSEGKEDELCTDGSVSSPFLNLHRKQAENVRKHSRKELTEKSNDVEDINLHPLEGSSDMKSILPTENNIHKTTKSLPPHKERKVLDCIKTSATPPAPISGKKLSSRFLLTKHSRSTLALKNNHYYHRRHRTNLIAETPLYHISPLSPLSPRSSANSPSPGHSLVAPIRVSTPTISSTPSPTPVPVPSTPSPTPVPVPSTPSPTPVHVPSTPSPTPVPVPSTPSPTPVPVPVPSTPSPTPVPVPSTPSPTPVPVPSTGIMYLPLPPGIFAQTPPPPRKSAPPSHITSVPITSPPSLNQDEKKKKAIILAASVSGIIVLIGLSLCYREAKTGKVERDESHLLILTSNDYSGGPPKIVRLGDTNTEESGSGVVINKGKNSSSGRNWSMKAGDNNNITVAETSTSEDIGLVTASSSGISAPPPPGPPPPPPPRPPALAFRPPPPPKSSHPPPAPPPKPMAGKNKAVPLGPLKQGSSSDGDAPKPKLKPFFWDKVNAKPDQSMVWHEINAGSFVFNEEMMESLFGCANQNKNERRKDSPSLDTSVHYIQIIDPKKAQNLSILLRALNVTTVEVVDALNEGNEIPVELIQTLLKMAPTQEEELKLRLFSGELSQLGPAERFLKVLVDIPFAFKRLESLMFMLILREESSSIKDSFETLEVACDKLRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRAVRTERASRSLSSIGTEDVDYENEESEEHYRSLGLQVVSSLNSELEDVKKAALIDGDALSTAVSKIGHSLVKSRDFLNNDLKNLEEESEFQICLEKFMEHAKEEVTLLVEEEKRIMGLVKSTADYFHGNAGKDEGLRLFLIVRDFLIILDKVCKEVKEATLKAMKASNKKETPSPSVSVPSSPDTRQRSPLQQQQSSDLHRRLFPAIAGRRVDYSSSDDDDDD 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00222 971 MobiDBLite consensus disorder prediction 437 479 - -
Vifa6g00222 971 MobiDBLite consensus disorder prediction 288 303 - -
Vifa6g00222 971 SMART it6_source 494 912 IPR015425 -
Vifa6g00222 971 MobiDBLite consensus disorder prediction 288 318 - -
Vifa6g00222 971 Pfam Formin Homology 2 Domain 498 897 IPR015425 -
Vifa6g00222 971 MobiDBLite consensus disorder prediction 913 971 - -
Vifa6g00222 971 PRINTS Proline rich extensin signature 250 271 - -
Vifa6g00222 971 PRINTS Proline rich extensin signature 192 204 - -
Vifa6g00222 971 PRINTS Proline rich extensin signature 237 249 - -
Vifa6g00222 971 PRINTS Proline rich extensin signature 210 226 - -
Vifa6g00222 971 PANTHER FORMIN-RELATED 302 965 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vifa6g00222 971 MobiDBLite consensus disorder prediction 915 948 - -
Vifa6g00222 971 MobiDBLite consensus disorder prediction 379 411 - -
Vifa6g00222 971 MobiDBLite consensus disorder prediction 382 411 - -
Vifa6g00222 971 SUPERFAMILY Formin homology 2 domain (FH2 domain) 507 912 - -
Vifa6g00222 971 MobiDBLite consensus disorder prediction 431 502 - -
Vifa6g00222 971 MobiDBLite consensus disorder prediction 199 272 - -
Vifa6g00222 971 ProSiteProfiles Formin homology-2 (FH2) domain profile. 494 923 IPR015425 -
Vifa6g00222 971 Gene3D Formin, FH2 domain 500 923 IPR042201 -
Vifa6g00222 971 MobiDBLite consensus disorder prediction 193 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00222 Vifa-Chr6 95455637 95460225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00222 461 915 FH2 protein (formin) Gene Family AT5G67470 46.220 2.75e-121 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00222 - - tpra:123921899 763.837