Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00210 ATGAGAAATGTTTTTCTCTTGTTCAACTTTTATGCTTCTTGGTTTCTAATATGTTCTTCTCCAACGTGTTTCGCAGGCGATACTTTGAAAGCTGGGCAGAAGATCATAGGCAATGAAACCAACCTTGTTTCATCTGGAAAAGTATTTGAACTAGGCTTTTTTACTCCTAGCATCACCGGTGGTGGTTCACAAAGCTACTTAGGCATATGGTATCACATGCAAGAGGAGTTAGAACAACCTGAAAATCAAATAGTCGTGTGGGTTGCTAATAGAGACAACCCAGTAGCTGTTAATTCAACAGGTGTTTTCAAAGTAGCTGAGGATGGGAATCTTGTTGTTGTAGACACATCCGTGAAACTCATGGATTCTGGTAACCTTGTGTTATATGATGATGAAGTGACGATCTGGGAGAGTTTTGAAAATCCAACGCACACGTTCCTACCCGGAATGAAGATGGATGGGAATATGCAACTGACAAGTTGGAGAAGTGGTGATGACCCAACAAGTGGAAATTTCAGTTTTAAGATGGAACAAAATGGGCTTAGAGGTTTACAACTTGTTGACCAACATGAGCTTGCCTATACTGAGCAAACTAATTCCTATGGAACGATACGACAATACAAGGCTGTTCCTCCATCCAACAGCTGCAACGACATCGATGGTGATTACCTCTGCAAATGTTTACCTGGATTCTACAAGGATAGCCTGGGAGATGGAGACTATTCTCTACTAGACGAGGCAAGTTGTACGAGGAGAAAATCAGCACCGTGTACTGGAAATGACACGGCTTTCTTGAACTTGACCAAGATAAAAACAGGAAGGCCGGATAAAAAGTTAGGAGCACAGTATGTAGAAAATTGCACATCTATGTGCCTGGAGATGTGTCCACATTGCCAGGCCTATTCATATGCTCCACCTCCTACGGATCACCAGCGCGCTAATAATCCATCAAACTGTTGGATCTGGACACACAGTTTAACTACTCTTAAAGAAGACTATACCAATTGGGAGGATGATCGCAGACTCTATGTCCTAGTTGATAAATCAGACATAGCACCAACTCCAAGAACTTGTGAACCTTGTGGTACAAACCCAGTTCCTTATCCTCTTAGTACCCGACCCAATTGTGGAGACCCGACATACTTCAACTTCAGATGCAACACCTCCGTCGGTCAACTCAGCTTCACCAACAATACCAACAACAACAACAACAGCAACGTTAATTACAGTGTTATTCGTGTAGTGCCTGGTTCAAGAACGTTTACCATTTATCAAGAGGACAAGGATAATTCGATTAATCGATTTTGTGGTGAAGGATCGAAGGGTGCGGGAGATCTAAAGGTTTCTTCACCATTTGGCTTGTCTACTGACACATGCTCTAAAAAGGTGGAAGTTAATTGGGAACCACCTTCCAAAGAACCCATATGTGATAACTCTACTGATTGCCAAGGTTGGAAACATTCTACTTGTAAAGGAAACAGGTGTCATTGCAATGAAAACTATCATTGGAGTGGAGAGCTTTTAAGTTGTACCGAAAATTTTTCAGAACCCGGATCCTTTCCTAATGCTACAAAACACTCAAAAAAAGCAAGCTCTTCCTCTTTGATTCTTGGCTTAACTCTTCCGGGTGTGGTTATTCTAGCATGCATCATTATTTTGGTTTATGTATGCAGACGGAGAATAGCTCATATGGTGAAGCAAGACAATGAAAGGAATCAGATAAATATTAGAGGGCGTTTTACCGACAGTGAAAGGCGTGTGAAGGACTTGATAGACATGGAGGGGTTGGAAGAGAATAACAATGAAGGAATAGAGGTTCCTTACTTTGATTTTGAGACCATAGTGATGGCAACTAATGATTTTTCAGATGCAAATAAACTTGGAAAAGGTGGTTATGGACCAGTTTACAAGGGTACGCTACAAGGTGGTCAAGAAATTGCAGTGAAGAGGCTTTCAACTGTGTCATCACAAGGTTTACAGGAATTTAAGAATGAAGTTGTTTTGATTGCCAAACTTCAACATCGAAACCTAGTTAAATTACGCGGCTATTGCATAAAACCAGGAGAAAAAATATTACTTTATGAATATATGCCTAATAAGAGTTTGGACTTATTAATCTTCGATCCTGCAAAAAGCATAATTTTAGATTGGCAAATGCGGTTTGATATAATTCTTGGAATTGCTCGAGGACTACTCTATCTTCATCAAGACTCTAGACTTAGAGTTATTCATCGAGATTTAAAAACTAGCAACATTCTTCTAGATGAGGAGATGCAACCAAAAATATCAGATTTTGGATTGGCGAGAATATTTGGAGGCAAAGAAACAGAAGCAAATACCGAGAGAGTTGTTGGAACATATGGATACATGTCTCCCGAGTATGCATTAGATGGACAATTCTCTACAAAATCAGATGTTTTCAGTTTTGGTGTTGTCTTGCTTGAAATCATAAGTGGAAAAAAGAACACGGGATTTTATCGAACTAAAGAAATTTCAAGCCTTTTGGGTTATGCCTGGACACTATGGAGAGAAGAAAAACTGCAAGATTTAATAGATTCATCTCTATGTGATACTTATGATGCTTACCAATTCATTAGGTGTTCACAAATAGGACTCTTATGCGTACAAGATGAACCAGAAGATCGTCCTCACATGTCAAATGTAGTTACCATGCTAGACAATGAAACAACAATCCTTCCAATTCCTAAACAACCGACCTTTTTTACACGTAAAAACCTATCTAACACAGCTTCTTCAAGTGTGCAACTTGAAAGTAGTTTTCAAGAAGGCCGATAG 2796 0.397 MRNVFLLFNFYASWFLICSSPTCFAGDTLKAGQKIIGNETNLVSSGKVFELGFFTPSITGGGSQSYLGIWYHMQEELEQPENQIVVWVANRDNPVAVNSTGVFKVAEDGNLVVVDTSVKLMDSGNLVLYDDEVTIWESFENPTHTFLPGMKMDGNMQLTSWRSGDDPTSGNFSFKMEQNGLRGLQLVDQHELAYTEQTNSYGTIRQYKAVPPSNSCNDIDGDYLCKCLPGFYKDSLGDGDYSLLDEASCTRRKSAPCTGNDTAFLNLTKIKTGRPDKKLGAQYVENCTSMCLEMCPHCQAYSYAPPPTDHQRANNPSNCWIWTHSLTTLKEDYTNWEDDRRLYVLVDKSDIAPTPRTCEPCGTNPVPYPLSTRPNCGDPTYFNFRCNTSVGQLSFTNNTNNNNNSNVNYSVIRVVPGSRTFTIYQEDKDNSINRFCGEGSKGAGDLKVSSPFGLSTDTCSKKVEVNWEPPSKEPICDNSTDCQGWKHSTCKGNRCHCNENYHWSGELLSCTENFSEPGSFPNATKHSKKASSSSLILGLTLPGVVILACIIILVYVCRRRIAHMVKQDNERNQINIRGRFTDSERRVKDLIDMEGLEENNNEGIEVPYFDFETIVMATNDFSDANKLGKGGYGPVYKGTLQGGQEIAVKRLSTVSSQGLQEFKNEVVLIAKLQHRNLVKLRGYCIKPGEKILLYEYMPNKSLDLLIFDPAKSIILDWQMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGLARIFGGKETEANTERVVGTYGYMSPEYALDGQFSTKSDVFSFGVVLLEIISGKKNTGFYRTKEISSLLGYAWTLWREEKLQDLIDSSLCDTYDAYQFIRCSQIGLLCVQDEPEDRPHMSNVVTMLDNETTILPIPKQPTFFTRKNLSNTASSSVQLESSFQEGR 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00210 931 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 167 IPR036426 -
Vifa6g00210 931 SMART blect_4 33 142 IPR001480 -
Vifa6g00210 931 CDD B_lectin 37 142 IPR001480 -
Vifa6g00210 931 Gene3D - 22 191 IPR036426 -
Vifa6g00210 931 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 104 915 - -
Vifa6g00210 931 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 697 900 - -
Vifa6g00210 931 CDD STKc_IRAK 627 894 - -
Vifa6g00210 931 SUPERFAMILY Protein kinase-like (PK-like) 602 915 IPR011009 -
Vifa6g00210 931 PIRSF SRK 456 930 IPR024171 GO:0004674
Vifa6g00210 931 PIRSF SRK 203 366 IPR024171 GO:0004674
Vifa6g00210 931 PIRSF SRK 1 213 IPR024171 GO:0004674
Vifa6g00210 931 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 586 696 - -
Vifa6g00210 931 Gene3D Transferase(Phosphotransferase) domain 1 697 899 - -
Vifa6g00210 931 ProSiteProfiles PAN/Apple domain profile. 257 347 IPR003609 -
Vifa6g00210 931 Pfam D-mannose binding lectin 116 157 IPR001480 -
Vifa6g00210 931 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Vifa6g00210 931 ProSiteProfiles Bulb-type lectin domain profile. 26 171 IPR001480 -
Vifa6g00210 931 ProSiteProfiles Protein kinase domain profile. 621 907 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00210 931 Gene3D Phosphorylase Kinase; domain 1 584 696 - -
Vifa6g00210 931 SMART serkin_6 621 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00210 931 Pfam Protein tyrosine and serine/threonine kinase 625 892 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00210 Vifa-Chr6 90698532 90704143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00210 518 910 Receptor kinase-like Gene Family AT4G23190 48.990 8.53e-125 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa6g00210 PK_Tyr_Ser-Thr 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00210 - - tpra:123882048 1106.66