Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00206 ATGAAGAAAAAGTCATGGTTATCTTGTTTCCTCATCATCTGCTTCTCTTTGCACACCTACCCTTCACTTTCTGCCCTGACCACCATCTCTTCAAACCAATCTCTTTCTGGTGATCAAACTCTTGTCTCCAAAGATGGCAACTTTGAATTGGGTTTCTTCAATAAAGGTAATTCCTCTAAGTACTATATAGGCATGTGGTACAAAAAGATATCTTTAAAGACATATGTTTGGGTGGCAAATAGAGATGACCCAGTTTCTGATAAAAGTGCTTCCAAGTTAGCTATTTCTGATGGTAATTTAGTTCTCTTGGATCAGTCTAAAAATCTAGTTTGGTCAACAAACTTGAGTTCTAATAGTTCAAATTCTGTATTTGCTGTCCTTTTAGATACTGGTAATATTATATTAAGTAATAGACCTAATGCATCAGCATCGGATGCTCTTTGGCAGAGTTTTGATTTTCCATCAGATACATGGCTTCCTGGTGGCAAAATTAAACTCGATAAAATAACAAAGAAGCCTCAATATCTTACTTCATGGAAGAACAGTGAAGATCCAGCAACTGGTTTGTTCTCTCTTGAACTAGACCCCAATGGAACCAATTCATACTTGATTCTTTGGAATAAAACTCAACAGTATTGGACAAGTGGTTCTTGGAATGGACAGATATTCAGTTTGGTTCCTGAAATGAGGTCAAACTACATCTACAATTTCAACTTTGAGAATAACGCTAACGAAAGCTACTTTACATACTCTTTGTACAGCAATTCTATTATATCTCGTTTCGTGATGGATGTGTCCGGGCAGATCAAGCAATTAACTTGGCTGGAAAGTACTCAGCAATGGAATTTATTTTGGTCACAGCCAAGAGGACAGTGTCAAGTTTATGCTTTCTGTGGTGCATTTGGTAGCTGCAATGAGATCTCAAAGCCATCCTGCAATTGTTTGAATGGTTATGAACCAAAGTCTCAATCTGATTGGGATCTCGGTGATTACTCAAAAGGGTGTGTGAAAACAAACAAATTTCAATGTGAGGTATCTCCTAATCCTTCTAATGGTGCCAAAGATAGGTTCTTAACCAAATCAAATTTAGCTTTGCCCGAACAGGCACAGCCTGTTGTGGAAGCTGGTTTGAGTGAGCAATGTGAGTCAACGTGTTTGAGCAACTGTTCCTGCACCGCATATGCTTATAACAGCAGTGGTTGTTTCATTTGGAGGGGTGAACTCTTGAATCTGCAACAGCTATCTCAAGATGACAGTAATGGACAGACATTGTTTCTCAAACTTGCAGCATCTGAGTTTCATGATTCAAAAAGCAATAAAGGAACAACCATTGGTATTGTTGGAGGTGCTGTTGGTGGTATAGTGATTCTCCTTGTTCTTGTTCTAATTCTTGTGATTAGGCGAAGAAAGAGACTATCTGGAGCAAGAACTTCTGTGGAGGGCTCGTTGATAGCATTTGCATACAGAGATTTGCAAAATGCAACAAAGAATTTCTCAGAGAAACTTGGAGGGGGAGGTTTCGGTTCTGTTTTCAAAGGAATATTACCTGATTCCAGTGTCATAGCAGTGAAGAAACTTGAAAGCATTAGCCAAGGCGAGAAGCAGTTTCGAACAGAAGTGAGTACTATTGGGACTGTTCAACATGTCAACCTTGTTAGGCTTCGTGGTTTCTGTTCTGAAGGCGACAAAAGGCTTCTGGTTTATGATTACATGCCAAATGGGTCTTTGGACTCACATCTGTTTCAGAACTCCAAGGTGTTGGATTGGAAAGTAAGATTCCAAATAGCTCTTGGAATAGCTAGAGGATTGACATATCTTCATGAAAAATGTAGAGACTGTATCATTCACTGCGACGTGAAGCCCGAAAATATTCTCATAGATTCTGAATTTTGTCCAAAGGTAGCAGACTTCGGCCTTGCAAAGCTTGTTGGAAGGGACTTCAGCAGGGTCCTAACTACCATGAGAGGAACAAGAGGTTATTTAGCTCCGGAATGGATTTCAGGAGTGGCTATTACCGCTAAAGCCGATGTTTACAGCTATGGAATGATGCTTTTTGAGCTTGTGTCGGGTAGAAGGAACTCTGATCCTTCTGGAGACGGTCAAATTAGATTCTTTCCTACATGGGCTGCTAACACAGTACACCAAGGAGGGAATGTGATTAGCCTATTGGACTCTAGATTGGATGGAAACGCTGATGTTGAGGAGATCATTCGAATCATAAAGATTGCTGCATGGTGTGTTCAAGATGATGAAACTCATAGACCATCCATGGGTCAAGTAGTTCAAATACTTGAAGGGGTGCTGGATGTTGCTTTGCCTCCAATTCCTAGATCCCTTCAAGCTTTTATTGATGACCATGAGGAAATTGTTTTCTTTACTGATTCAAACTCCACTCATAACTCACAGGTAAAAAGCAGTGTTTCGACAGCCTCCTCTCAAGCTAAAAGCATCATCTCATCTACTAGTACTACTAGTCCTTGA 2481 0.4006 MKKKSWLSCFLIICFSLHTYPSLSALTTISSNQSLSGDQTLVSKDGNFELGFFNKGNSSKYYIGMWYKKISLKTYVWVANRDDPVSDKSASKLAISDGNLVLLDQSKNLVWSTNLSSNSSNSVFAVLLDTGNIILSNRPNASASDALWQSFDFPSDTWLPGGKIKLDKITKKPQYLTSWKNSEDPATGLFSLELDPNGTNSYLILWNKTQQYWTSGSWNGQIFSLVPEMRSNYIYNFNFENNANESYFTYSLYSNSIISRFVMDVSGQIKQLTWLESTQQWNLFWSQPRGQCQVYAFCGAFGSCNEISKPSCNCLNGYEPKSQSDWDLGDYSKGCVKTNKFQCEVSPNPSNGAKDRFLTKSNLALPEQAQPVVEAGLSEQCESTCLSNCSCTAYAYNSSGCFIWRGELLNLQQLSQDDSNGQTLFLKLAASEFHDSKSNKGTTIGIVGGAVGGIVILLVLVLILVIRRRKRLSGARTSVEGSLIAFAYRDLQNATKNFSEKLGGGGFGSVFKGILPDSSVIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGDKRLLVYDYMPNGSLDSHLFQNSKVLDWKVRFQIALGIARGLTYLHEKCRDCIIHCDVKPENILIDSEFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFELVSGRRNSDPSGDGQIRFFPTWAANTVHQGGNVISLLDSRLDGNADVEEIIRIIKIAAWCVQDDETHRPSMGQVVQILEGVLDVALPPIPRSLQAFIDDHEEIVFFTDSNSTHNSQVKSSVSTASSQAKSIISSTSTTSP 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00206 826 Pfam Protein kinase domain 499 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00206 826 PANTHER OS07G0415500 PROTEIN 7 776 - -
Vifa6g00206 826 Gene3D - 23 151 IPR036426 -
Vifa6g00206 826 Gene3D Transferase(Phosphotransferase) domain 1 571 771 - -
Vifa6g00206 826 SUPERFAMILY Protein kinase-like (PK-like) 480 765 IPR011009 -
Vifa6g00206 826 FunFam Serine/threonine-protein kinase 463 570 - -
Vifa6g00206 826 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Vifa6g00206 826 SMART blect_4 32 154 IPR001480 -
Vifa6g00206 826 Pfam S-locus glycoprotein domain 213 322 IPR000858 GO:0048544
Vifa6g00206 826 SMART ntp_6 352 428 IPR003609 -
Vifa6g00206 826 CDD B_lectin 32 154 IPR001480 -
Vifa6g00206 826 FunFam Serine/threonine-protein kinase 571 772 - -
Vifa6g00206 826 PIRSF SRK 1 816 IPR024171 GO:0004674
Vifa6g00206 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Vifa6g00206 826 ProSiteProfiles Protein kinase domain profile. 496 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00206 826 Pfam PAN-like domain 353 410 IPR003609 -
Vifa6g00206 826 CDD PAN_AP_plant 350 429 - -
Vifa6g00206 826 CDD STKc_IRAK 502 766 - -
Vifa6g00206 826 Pfam D-mannose binding lectin 74 180 IPR001480 -
Vifa6g00206 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 219 IPR036426 -
Vifa6g00206 826 ProSiteProfiles PAN/Apple domain profile. 343 429 IPR003609 -
Vifa6g00206 826 SMART serkin_6 496 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00206 826 FunFam Serine/threonine-protein kinase 22 151 - -
Vifa6g00206 826 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Vifa6g00206 826 Gene3D Phosphorylase Kinase; domain 1 463 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00206 Vifa-Chr6 89073554 89076034 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00206 437 770 Receptor kinase-like Gene Family AT1G56120 45.455 2.68e-79 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa6g00206 Pkinase 5.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00206 - - gmx:100305421 1226.08