Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00200 ATGGCGAGAACACCTTATTGTGACAAAAGTGGAATGAGGAAAGGGACTTGGACAGCTGAGGAAGATAGGAAATTAATTGCTTATGTAACTAGATATGGTTGCTGGAATTGGCGCCAACTCCCTAAGTTTGCAGGTCTTTCAAGATGTGGAAAGAGTTGTAGGTTAAGGTGGTTGAATTATCTAAGGCCTAATATCAAAAGAGGGAACTTCACCGAACAAGAAGAGGAACTGATTATCCGAATGCATAAAAATCTGGGAAATAGATGGTCAGTCATTGCAGCTGAGTTACCTGGAAGAACAGATAACGAAGTGAAGAACCATTGGCATACTTCTCTTAAGAAGAGAGTTATACATAACAAGAACACAATCTCAAATGAAGAAACCCTAGTTACCAAATCTCCAGCGAGTTCCCAAATCGCAGACATCTCTGGCCCATTATCTCCATTTTCTTCATCCAGTGAATTCTCTTCCACAGCTGAAGATGATTTTGGTTTTCTAGATGCATTTATAGAATCTATGGATGAAAGTTTTTGGTTGGATGATCTTTCAAACACACCAAGTGAAATAGTGCAAAACAATATTTGTGATACAACCAATAATGATGGTGTTTTAGTGTCTCACAATCATTCGTCCAATGCAAGTTTTGTTCATGGTAATGACTTTAGCAGCTTTCTAGATGCGTACACAGAGTCTACAGTTGATAGTTTTTGGACGCACCCATATGAAGGTGACATGTCCCATGTTCCAGCGCAACTGACACCTTTGCCAATGGAATCTGAATATTTTTCAATAGTATATGATGAAGATATATGGAGTTGA 819 0.3871 MARTPYCDKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNYLRPNIKRGNFTEQEEELIIRMHKNLGNRWSVIAAELPGRTDNEVKNHWHTSLKKRVIHNKNTISNEETLVTKSPASSQIADISGPLSPFSSSSEFSSTAEDDFGFLDAFIESMDESFWLDDLSNTPSEIVQNNICDTTNNDGVLVSHNHSSNASFVHGNDFSSFLDAYTESTVDSFWTHPYEGDMSHVPAQLTPLPMESEYFSIVYDEDIWS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00200 272 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vifa6g00200 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa6g00200 272 CDD SANT 69 112 IPR001005 -
Vifa6g00200 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa6g00200 272 CDD SANT 16 61 IPR001005 -
Vifa6g00200 272 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 184 - -
Vifa6g00200 272 Gene3D - 68 138 - -
Vifa6g00200 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa6g00200 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa6g00200 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa6g00200 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa6g00200 272 Gene3D - 14 66 - -
Vifa6g00200 272 FunFam MYB-related transcription factor 13 66 - -
Vifa6g00200 272 SMART sant 13 63 IPR001005 -
Vifa6g00200 272 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00200 Vifa-Chr6 86754202 86755105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00200 1 201 MYB Transcription Factor Family AT1G06180 49.048 5.71e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g00200 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00200 K09422 - gmx:100777107 329.717