Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00199 ATGGTAAGAGCTCCTTTCTATGACAAAAATGGAGTTAAGAAAGGTGCTTGGAGTAGAGAAGAAGATGAGTGTTTAACTGCTTATATTCAGAAAAATGGTCATCCTAATTGGCGTCAACTCCCCAAGCTTTCAGGTTTAGCGAGATGTGGAAAAAGTTGCAGACTTCGTTGGTTGAATTACTTAAAGCCAAATCTTAAACATGGAAACTACACAAGAGAGGAAGAAGTGATTATCATCAAATTACACCAACAACTTGGAAATAAATGGTCTGTGATTGCTGAAAAGCTGCCAGGAAGAACGGACCACGAGATAAAGAACTATTGGCATAGCTACTTAAAAAAGTGCTCAAATATAATTGACAACGAATACACAATTTCTGAGTTGAATTCAAAATCAAATGATACTCTTGAAGAAAATGATAGTGATAAGAATTCTGTGACACCTCAAAGCCCTAGCTCTGGTGATGGTAAAGACTTTGGTAACTATATCTTAGAAAGCTCGACATTGCCGAAGCTAGCAGAAACATCAACTGAAGAGAACTATTCACCTAGCTCCATGAATAGCTCCTTGATGGAAGAAGACAATGGTGCTCCATGGTTGGGGTTGGAAGAATTTGAGGGCGATTTTTGGAATGAACCATTCGTTCTTGATGATACACACACTACTAATGAGATATCTATTGATGACATAGAGTTAATGATTTCAGACTACTATGATGGTTCATATATGTTTTCAACATAG 741 0.3725 MVRAPFYDKNGVKKGAWSREEDECLTAYIQKNGHPNWRQLPKLSGLARCGKSCRLRWLNYLKPNLKHGNYTREEEVIIIKLHQQLGNKWSVIAEKLPGRTDHEIKNYWHSYLKKCSNIIDNEYTISELNSKSNDTLEENDSDKNSVTPQSPSSGDGKDFGNYILESSTLPKLAETSTEENYSPSSMNSSLMEEDNGAPWLGLEEFEGDFWNEPFVLDDTHTTNEISIDDIELMISDYYDGSYMFST 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00199 246 MobiDBLite consensus disorder prediction 142 156 - -
Vifa6g00199 246 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa6g00199 246 MobiDBLite consensus disorder prediction 172 192 - -
Vifa6g00199 246 CDD SANT 69 112 IPR001005 -
Vifa6g00199 246 Gene3D - 7 67 - -
Vifa6g00199 246 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa6g00199 246 FunFam Transcription factor RAX3 7 67 - -
Vifa6g00199 246 CDD SANT 16 61 IPR001005 -
Vifa6g00199 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa6g00199 246 SMART sant 13 63 IPR001005 -
Vifa6g00199 246 SMART sant 66 114 IPR001005 -
Vifa6g00199 246 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vifa6g00199 246 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa6g00199 246 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa6g00199 246 MobiDBLite consensus disorder prediction 172 193 - -
Vifa6g00199 246 Gene3D - 69 115 - -
Vifa6g00199 246 MobiDBLite consensus disorder prediction 132 159 - -
Vifa6g00199 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa6g00199 246 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00199 Vifa-Chr6 85751066 85752099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00199 1 114 MYB Transcription Factor Family AT1G06180 66.667 1.67e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g00199 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00199 K09422 - gmx:100776043 227.254